Skip to content

matRad extension for neutron dose calculation #842

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom
Draft
wants to merge 46 commits into
base: dev
Choose a base branch
from
Draft

matRad extension for neutron dose calculation #842

wants to merge 46 commits into from

Conversation

@LucasBeSommer
Copy link

Neutron dose engine for fast neutron therapy and Boron neutron capture therapy.
Dose calculation using PBK and Monte Carlo (MCNP 6.2).

LucasSommer added 30 commits April 8, 2024 12:53
@LucasSommer
Test commit
886d53f
@LucasSommer
2024_03_changesDKFZ
5fd4d97
@LucasSommer
2024_cleanUp1
4aaf957
@LucasSommer
2024_04_08_addMachinesNeutrons
263d028
@LucasSommer
2024_04_08_cleanUp2
69ba548
@LucasSommer
2024_04_08_Update1
679f6a5
@LucasSommer
2024_04_09_Update1
908eac6
@LucasSommer
2024_04_09_Update2
46325cf 
PBK dose calculation engine was updated for neutron PBK calculation.
@LucasSommer
2024_04_10_cleanUp1
001aca6
@LucasSommer
2024_04_10_Update1
49213de 
Todos:
- KERMA correction only implemented for bixel based dose calculation and intentional error for multiple CT scenarios
- PBK based dose calculation only implemented for neutron PBK -> todo: mixed field
@LucasSommer
2024_04_12_Update1
5714f69
@LucasSommer
2024_04_12_Update2
2cb0a08
@LucasSommer
2024_04_19_Update1
5d3d321
@LucasSommer
2024_04_22_Update1
f37a607
@LucasSommer
2024_04_22_Update2
2eb7347
@LucasSommer
2024_04_25_Update1
eec9b9b
@LucasSommer
2024_04_25_Update2
c5e3778
@LucasSommer
2024_04_25_Update3
e53f240
@LucasSommer
2024_04_25_Update5
769c1ce
@LucasSommer
2024_04_25_Update6
c42b838
@LucasSommer
2024_04_26_Update1
0813381
@LucasSommer
2024_05_06_Update1
8eba87a
@LucasSommer
2024_05_17_Update1
64af9fd
@LucasSommer
Update 06/2024
35f784a
@LucasSommer
Update 07/2024 e0404#1
999b3cc
@LucasSommer
2025_02_matRadHackathon_#1
9fe4e5a 
Fix of dose engine selection for PBK and MCNP calculations.
@LucasSommer
2025_02_matRadHackathon_#2
71c4791 
Updated MCNP dose calculation.
ToDo: Include circular source in case a BNCT machine was selected.
@LucasSommer
Merge remote-tracking branch 'upstream/dev' into refactor/doseEngines…
4919d52 
…RobOpt
@LucasSommer
2025_02_matRadHackathon_#3
482ed12 
Added steering options for neutrons as copy from photon options.
ToDo:
Clean up and decide what is needed.
@LucasSommer
2025_02_matRadHackathon_#4
57c311d 
Neutrons added to bio model.
LucasSommer added 13 commits May 8, 2025 15:15
@LucasSommer
Update 08/05/2025
6228ba5 
Update in bixel positioning in matRad_makeSourceMCNP
@LucasSommer
Update 08/05/2025
4b77a39 
Updated matRad_bixelDoseCalculatorMCNP
@LucasSommer
Update 08/05/2025
06ecc20 
Update of matRad_genVarCT2tissueConversion to newer XS.
@LucasSommer
Update 08/05/2025
ee10b02
@LucasSommer
Update
0e92e2f
@LucasSommer
Update 09/05/2025
0fe3b38 
Some data was excluded like patient CT from MEDAPP.
Clean up and additional machines added.
@LucasSommer
Update 09/05/2025
6a57ff8
@LucasSommer
Update
8aae83b
@LucasSommer
Update
cc94f35
@LucasSommer
Update
256fd04
@LucasSommer
Update 09/05/2025
9291a7a 
matRad_cleanRepFromRUNTPE added to clean up runfile_temp.
@LucasSommer
Update 12/05/2025
e507fed 
Update matRad_makeSourceMCNP.m with correction so isocenter calculation.
@LucasSommer
Update of examples for neutrons 13/05/2025
99b004b
@wahln
Copy link
Contributor

wahln commented May 15, 2025 •
edited
Loading

Thanks for this PR.
I just took a look at the commit history. It seems like that in February, we merged the latest developments from the dev branch into your branch. Thus please reopen the PR onto the dev branch - at the moment, a lot of "changed files" (>700) light up just containing updates from dev to doseEnginesRobOpt. If the PR goes to the dev branch, this should be reduced to your changes for the neutron integration.
I can then also easily take care of the minor modifications in case of some udpates on dev are incompatible.

@LucasBeSommer LucasBeSommer changed the base branch from refactor/doseEnginesRobOpt to dev May 15, 2025 16:03
@LucasBeSommer
Copy link
Author

LucasBeSommer commented May 15, 2025 •
edited
Loading

Hi!
Thanks for checking! I changed the branch to dev. Let me know if this was not what you intended me to do!
Thanks!

@wahln
Copy link
Contributor

wahln commented May 15, 2025

Perfect, looks much cleaner now, since only new files light up in the "files changed". I hope we soon find the time to review.

Some initial things I observe:

  • Th .DS_Store files should not be part of the repository
  • Some figures are in the repository (e.g. for the kerma factors) these should not be there as well.
  • Maybe we find a somewhat cleaner way to store some data from within the text files

Thanks for the great contribution!

@github-actions
Copy link

This PR was automatically marked as stale it has been open 30 days with no activity. Please review/update/merge this PR.

@github-actions github-actions bot added the stale Automatic label for stale issues label Jun 15, 2025
@github-actions github-actions bot removed the stale Automatic label for stale issues label Aug 12, 2025
@github-actions
Copy link

This PR was automatically marked as stale it has been open 30 days with no activity. Please review/update/merge this PR.

@github-actions github-actions bot added the stale Automatic label for stale issues label Sep 12, 2025
@wahln
Merge branch 'dev' into pr/842
fc430b7 
# Conflicts:
#	.gitignore
#	matRad/bioModels/matRad_EmptyBiologicalModel.m
#	matRad/gui/widgets/matRad_PlanWidget.m
@github-actions github-actions bot removed the stale Automatic label for stale issues label Sep 24, 2025
@github-actions
Copy link

This PR was automatically marked as stale it has been open 30 days with no activity. Please review/update/merge this PR.

@github-actions github-actions bot added the stale Automatic label for stale issues label Oct 25, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

No reviews

Assignees

No one assigned

Labels

stale Automatic label for stale issues

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

3 participants

@LucasBeSommer @wahln @LucasSommer