update build instructions #1020

rabernat · 2025-06-30T14:41:07Z

This update reflects my attempt to get the docs building locally.

Despite this, I am still unable to get the docs building. I am getting many WARNING - markdown_exec: Execution of python code block exited with errors which indicate some problem with my environment.

@ianhi - do you have any guidance for getting a local doc build environment working beyond what I have documented in this PR?

Error Log

I had to shorten the full stack trace to get GH to allow me to paste.

...
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [dask](/icechunk-python/dask)
WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             import dask.array as da
             shape = (100, 100)
             dask_chunks = (20, 20)
             dask_array = da.random.random(shape, chunks=dask_chunks)

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session dask; n2>", line 1, in <module>
                 import dask.array as da
             ModuleNotFoundError: No module named 'dask'

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             import zarr

             zarr_chunks = (10, 10)
             group = zarr.group(store=icechunk_session.store, overwrite=True)

             zarray = group.create_array(
                 "array",
                 shape=shape,
                 chunks=zarr_chunks,
                 dtype="f8",
                 fill_value=float("nan"),
             )

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session dask; n3>", line 8, in <module>
                 shape=shape,
                       ^^^^^
             NameError: name 'shape' is not defined

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             import icechunk.dask

             icechunk.dask.store_dask(
                 icechunk_session,
                 sources=[dask_array],
                 targets=[zarray]
             )

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session dask; n4>", line 1, in <module>
                 import icechunk.dask
               File "/Users/rabernat/gh/earth-mover/icechunk/icechunk-python/python/icechunk/dask.py", line 8, in <module>
                 import dask
             ModuleNotFoundError: No module named 'dask'

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:


             from distributed import Client
             client = Client()

             import icechunk.dask

             # start a new session. Old session is readonly after committing

             icechunk_session = icechunk_repo.writable_session("main")
             zarr_chunks = (10, 10)
             with icechunk_session.allow_pickling():
                 group = zarr.group(
                     store=icechunk_session.store,
                     overwrite=True
                 )

                 zarray = group.create_array(
                     "array",
                     shape=shape,
                     chunks=zarr_chunks,
                     dtype="f8",
                     fill_value=float("nan"),
                 )

                 icechunk.dask.store_dask(
                     icechunk_session,
                     sources=[dask_array],
                     targets=[zarray]
                 )
             print(icechunk_session.commit("wrote a dask array!"))

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session dask; n6>", line 2, in <module>
                 from distributed import Client
             ModuleNotFoundError: No module named 'distributed'

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             import icechunk.xarray
             import xarray as xr

             icechunk_session = icechunk_repo.writable_session("main")
             dataset = xr.tutorial.open_dataset(
                 "rasm",
                 chunks={"time": 1}).isel(time=slice(24)
                 )

             # `to_icechunk` takes care of "allow_pickling" for you
             icechunk.xarray.to_icechunk(dataset, icechunk_session, mode="w")

             with icechunk_session.allow_pickling():
                 roundtripped = xr.open_zarr(icechunk_session.store, consolidated=False)
                 print(dataset.identical(roundtripped))

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session dask; n7>", line 1, in <module>
                 import icechunk.xarray
               File "/Users/rabernat/gh/earth-mover/icechunk/icechunk-python/python/icechunk/xarray.py", line 9, in <module>
                 import xarray as xr
             ModuleNotFoundError: No module named 'xarray'

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             print(icechunk_session.commit("wrote an Xarray dataset!"))

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session dask; n8>", line 1, in <module>
                 print(icechunk_session.commit("wrote an Xarray dataset!"))
                       ~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/gh/earth-mover/icechunk/icechunk-python/python/icechunk/session.py", line 213, in commit
                 return self._session.commit(
                        ~~~~~~~~~~~~~~~~~~~~^
                     message, metadata, rebase_with=rebase_with, rebase_tries=rebase_tries
                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                 )
                 ^
             icechunk.IcechunkError:   × session error: Read only sessions cannot modify the repository
               │
               │ context:
               │    0: icechunk::session::_commit
               │            with wrote an Xarray dataset! rewrite_manifests=false
               │              at icechunk/src/session.rs:979
               │    1: icechunk::session::commit
               │            with wrote an Xarray dataset!
               │              at icechunk/src/session.rs:942
               │


WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             # handy when running mkdocs serve locally
             client.shutdown();

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session dask; n9>", line 2, in <module>
                 client.shutdown();
                 ^^^^^^
             NameError: name 'client' is not defined

INFO    -  Doc file 'icechunk-python/dask.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/dask.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/dask.md' contains an absolute link '/icechunk-python/dask', it was left as is. Did you mean 'dask.md'?
2025-06-30 10:37:59,823 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [expiration](/icechunk-python/expiration)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [expiration](/icechunk-python/expiration)
INFO    -  Doc file 'icechunk-python/expiration.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/expiration.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/expiration.md' contains an absolute link '/icechunk-python/expiration', it was left as is. Did you mean
           'expiration.md'?
2025-06-30 10:38:01,053 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [faq](/icechunk-python/faq)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [faq](/icechunk-python/faq)
INFO    -  Doc file 'icechunk-python/faq.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/faq.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/faq.md' contains an absolute link '/icechunk-python/faq', it was left as is. Did you mean 'faq.md'?
2025-06-30 10:38:01,099 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [parallel](/icechunk-python/parallel)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [parallel](/icechunk-python/parallel)
WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             import xarray as xr
             import tempfile
             from icechunk import Repository, local_filesystem_storage

             ds = xr.tutorial.open_dataset("rasm").isel(time=slice(24))
             repo = Repository.create(local_filesystem_storage(tempfile.TemporaryDirectory().name))
             session = repo.writable_session("main")

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session parallel; n1>", line 1, in <module>
                 import xarray as xr
             ModuleNotFoundError: No module named 'xarray'

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             chunks = {1 if dim == "time" else ds.sizes[dim] for dim in ds.Tair.dims}

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session parallel; n2>", line 1, in <module>
                 chunks = {1 if dim == "time" else ds.sizes[dim] for dim in ds.Tair.dims}
                                                                            ^^
             NameError: name 'ds' is not defined

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             ds.to_zarr(session.store, compute=False, encoding={"Tair": {"chunks": chunks}}, mode="w")
             # this commit is optional, but may be useful in your workflow
             print(session.commit("initialize store"))

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session parallel; n3>", line 1, in <module>
                 ds.to_zarr(session.store, compute=False, encoding={"Tair": {"chunks": chunks}}, mode="w")
                 ^^
             NameError: name 'ds' is not defined

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             ondisk = xr.open_zarr(repo.readonly_session("main").store, consolidated=False)
             xr.testing.assert_identical(ds, ondisk)

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session parallel; n5>", line 1, in <module>
                 ondisk = xr.open_zarr(repo.readonly_session("main").store, consolidated=False)
                          ^^
             NameError: name 'xr' is not defined

INFO    -  Doc file 'icechunk-python/parallel.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/parallel.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/parallel.md' contains an absolute link '/icechunk-python/parallel', it was left as is. Did you mean 'parallel.md'?
2025-06-30 10:38:01,162 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [performance](/icechunk-python/performance)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [performance](/icechunk-python/performance)
INFO    -  Doc file 'icechunk-python/performance.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/performance.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/performance.md' contains an absolute link '/icechunk-python/performance', it was left as is. Did you mean
           'performance.md'?
2025-06-30 10:38:01,264 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [quickstart](/icechunk-python/quickstart)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [quickstart](/icechunk-python/quickstart)
INFO    -  Doc file 'icechunk-python/quickstart.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/quickstart.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/quickstart.md' contains an absolute link '/icechunk-python/quickstart', it was left as is. Did you mean
           'quickstart.md'?
2025-06-30 10:38:01,344 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [reference](/icechunk-python/reference)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [reference](/icechunk-python/reference)
INFO    -  mkdocstrings_handlers: Formatting signatures requires either Black or Ruff to be installed.
INFO    -  Doc file 'icechunk-python/reference.md' contains an absolute link '/icechunk-python/parallel#uncooperative-distributed-writes', it was left as
           is. Did you mean 'parallel.md#uncooperative-distributed-writes'?
INFO    -  Doc file 'icechunk-python/reference.md' contains an absolute link '/icechunk-python/parallel#uncooperative-distributed-writes', it was left as
           is. Did you mean 'parallel.md#uncooperative-distributed-writes'?
INFO    -  Doc file 'icechunk-python/reference.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/reference.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/reference.md' contains an absolute link '/icechunk-python/reference', it was left as is. Did you mean
           'reference.md'?
2025-06-30 10:38:01,837 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [storage](/icechunk-python/storage)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [storage](/icechunk-python/storage)
INFO    -  Doc file 'icechunk-python/storage.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/storage.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/storage.md' contains an absolute link '/icechunk-python/storage', it was left as is. Did you mean 'storage.md'?
2025-06-30 10:38:01,898 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [version-control](/icechunk-python/version-control)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [version-control](/icechunk-python/version-control)
INFO    -  DeprecationWarning: Use Group.create_array instead.
             File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/warnings.py", line 636, in wrapper
               warn(msg, category=category, stacklevel=stacklevel + 1)
             File "<code block: session version; n30>", line 9, in
INFO    -  DeprecationWarning: Use AsyncGroup.create_array instead.
             File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/zarr/core/group.py", line 2529, in create_dataset
               return Array(self._sync(self._async_group.create_dataset(name, **kwargs)))
             File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/warnings.py", line 636, in wrapper
               warn(msg, category=category, stacklevel=stacklevel + 1)
INFO    -  Doc file 'icechunk-python/version-control.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an absolute link '/icechunk-python/version-control', it was left as is. Did you mean
           'version-control.md'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository', it was left as is.
           Did you mean 'reference.md#icechunk.Repository'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link './reference/#icechunk.Repository.ancestry', it was left
           as is. Did you mean 'reference.md#icechunk.Repository.ancestry'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.SnapshotInfo', it was left as is.
           Did you mean 'reference.md#icechunk.SnapshotInfo'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.create_branch', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.create_branch'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.list_branches', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.list_branches'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.lookup_branch', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.lookup_branch'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.delete_branch', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.delete_branch'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.delete_branch', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.delete_branch'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.reset_branch', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.reset_branch'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.reset_branch', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.reset_branch'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.create_tag', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.create_tag'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.list_tags', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.list_tags'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.lookup_tag', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.lookup_tag'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Repository.delete_tag', it was
           left as is. Did you mean 'reference.md#icechunk.Repository.delete_tag'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.ConflictError', it was left as
           is. Did you mean 'reference.md#icechunk.ConflictError'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Session.rebase', it was left as
           is. Did you mean 'reference.md#icechunk.Session.rebase'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.Session.rebase', it was left as
           is. Did you mean 'reference.md#icechunk.Session.rebase'?
INFO    -  Doc file 'icechunk-python/version-control.md' contains an unrecognized relative link '../reference/#icechunk.BasicConflictSolver', it was left
           as is. Did you mean 'reference.md#icechunk.BasicConflictSolver'?
2025-06-30 10:38:02,056 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [virtual](/icechunk-python/virtual)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [virtual](/icechunk-python/virtual)
INFO    -  Doc file 'icechunk-python/virtual.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/virtual.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/virtual.md' contains an absolute link '/icechunk-python/virtual', it was left as is. Did you mean 'virtual.md'?
2025-06-30 10:38:02,104 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [xarray](/icechunk-python/xarray)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [xarray](/icechunk-python/xarray)
WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             import xarray as xr
             import icechunk

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n1>", line 1, in <module>
                 import xarray as xr
             ModuleNotFoundError: No module named 'xarray'

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             import tempfile
             storage_config = icechunk.local_filesystem_storage(tempfile.TemporaryDirectory().name)
             repo = icechunk.Repository.create(storage_config)

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n2>", line 2, in <module>
                 storage_config = icechunk.local_filesystem_storage(tempfile.TemporaryDirectory().name)
                                  ^^^^^^^^
             NameError: name 'icechunk' is not defined

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             ds = xr.tutorial.open_dataset('rasm')

             ds1 = ds.isel(time=slice(None, 18))  # part 1
             ds2 = ds.isel(time=slice(18, None))  # part 2

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n3>", line 1, in <module>
                 ds = xr.tutorial.open_dataset('rasm')
                      ^^
             NameError: name 'xr' is not defined

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             session = repo.writable_session("main")

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n4>", line 1, in <module>
                 session = repo.writable_session("main")
                           ^^^^
             NameError: name 'repo' is not defined. Did you mean: 'repr'?

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             from icechunk.xarray import to_icechunk

             to_icechunk(ds, session)

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n5>", line 1, in <module>
                 from icechunk.xarray import to_icechunk
               File "/Users/rabernat/gh/earth-mover/icechunk/icechunk-python/python/icechunk/xarray.py", line 9, in <module>
                 import xarray as xr
             ModuleNotFoundError: No module named 'xarray'

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             first_snapshot = session.commit("add RASM data to store")
             print(first_snapshot)

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n6>", line 1, in <module>
                 first_snapshot = session.commit("add RASM data to store")
                                  ^^^^^^^
             NameError: name 'session' is not defined

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             # we have to get a new session after committing
             session = repo.writable_session("main")
             to_icechunk(ds2, session, append_dim='time')

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n7>", line 2, in <module>
                 session = repo.writable_session("main")
                           ^^^^
             NameError: name 'repo' is not defined. Did you mean: 'repr'?

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             print(session.commit("append more data"))

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n8>", line 1, in <module>
                 print(session.commit("append more data"))
                       ^^^^^^^
             NameError: name 'session' is not defined

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             xr.set_options(display_style="text")
             print(xr.open_zarr(session.store, consolidated=False))

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n9>", line 1, in <module>
                 xr.set_options(display_style="text")
                 ^^
             NameError: name 'xr' is not defined

WARNING -  markdown_exec: Execution of python code block exited with errors

           Code block is:

             session = repo.readonly_session(snapshot_id=first_snapshot)

             print(xr.open_zarr(session.store, consolidated=False))

           Output is:

             Traceback (most recent call last):
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/python.py", line 71,
           in _run_python
                 exec_python(code, code_block_id, exec_globals)
                 ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
               File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/markdown_exec/_internal/formatters/_exec_python.py", line
           8, in exec_python
                 exec(compiled, exec_globals)  # noqa: S102
                 ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
               File "<code block: session xarray; n10>", line 1, in <module>
                 session = repo.readonly_session(snapshot_id=first_snapshot)
                           ^^^^
             NameError: name 'repo' is not defined. Did you mean: 'repr'?

INFO    -  Doc file 'icechunk-python/xarray.md' contains an absolute link '/', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/xarray.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean 'index.md'?
INFO    -  Doc file 'icechunk-python/xarray.md' contains an absolute link '/icechunk-python/xarray', it was left as is. Did you mean 'xarray.md'?
INFO    -  Doc file 'icechunk-python/xarray.md' contains an absolute link '/icechunk-python/quickstart/', it was left as is. Did you mean
           'quickstart.md'?
2025-06-30 10:38:02,160 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [cheatsheets](/icechunk-python/cheatsheets)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [cheatsheets](/icechunk-python/cheatsheets)
INFO    -  Doc file 'icechunk-python/cheatsheets/index.md' contains an absolute link '/', it was left as is. Did you mean '../../index.md'?
INFO    -  Doc file 'icechunk-python/cheatsheets/index.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean '../index.md'?
INFO    -  Doc file 'icechunk-python/cheatsheets/index.md' contains an absolute link '/icechunk-python/cheatsheets', it was left as is. Did you mean
           'index.md'?
INFO    -  Doc file 'icechunk-python/cheatsheets/index.md' contains an absolute link '/icechunk-python/cheatsheets/git-users/', it was left as is. Did
           you mean 'git-users.md'?
2025-06-30 10:38:02,201 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [cheatsheets](/icechunk-python/cheatsheets) / [git-users](/icechunk-python/cheatsheets/git-users)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [cheatsheets](/icechunk-python/cheatsheets) /
           [git-users](/icechunk-python/cheatsheets/git-users)
INFO    -  Doc file 'icechunk-python/cheatsheets/git-users.md' contains an absolute link '/', it was left as is. Did you mean '../../index.md'?
INFO    -  Doc file 'icechunk-python/cheatsheets/git-users.md' contains an absolute link '/icechunk-python', it was left as is. Did you mean
           '../index.md'?
INFO    -  Doc file 'icechunk-python/cheatsheets/git-users.md' contains an absolute link '/icechunk-python/cheatsheets', it was left as is. Did you mean
           'index.md'?
INFO    -  Doc file 'icechunk-python/cheatsheets/git-users.md' contains an absolute link '/icechunk-python/cheatsheets/git-users', it was left as is. Did
           you mean 'git-users.md'?
2025-06-30 10:38:02,241 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [examples](/icechunk-python/examples) / [bank_accounts](/icechunk-python/examples/bank_accounts)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [examples](/icechunk-python/examples) /
           [bank_accounts](/icechunk-python/examples/bank_accounts)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/examples/bank_accounts.py
2025-06-30 10:38:02,761 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [examples](/icechunk-python/examples) / [dask_write](/icechunk-python/examples/dask_write)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [examples](/icechunk-python/examples) /
           [dask_write](/icechunk-python/examples/dask_write)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/examples/dask_write.py
2025-06-30 10:38:03,285 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [examples](/icechunk-python/examples) / [high_concurrency](/icechunk-python/examples/high_concurrency)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [examples](/icechunk-python/examples) /
           [high_concurrency](/icechunk-python/examples/high_concurrency)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/examples/high_concurrency.py
2025-06-30 10:38:03,880 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [examples](/icechunk-python/examples) / [mpwrite](/icechunk-python/examples/mpwrite)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [examples](/icechunk-python/examples) /
           [mpwrite](/icechunk-python/examples/mpwrite)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/examples/mpwrite.py
2025-06-30 10:38:06,701 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [ingestion](/icechunk-python/ingestion) / [glad-ingest](/icechunk-python/ingestion/glad-ingest)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [ingestion](/icechunk-python/ingestion) /
           [glad-ingest](/icechunk-python/ingestion/glad-ingest)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/ingestion/glad-ingest.ipynb
2025-06-30 10:38:07,504 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [conflict](/icechunk-python/notebooks/conflict)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [conflict](/icechunk-python/notebooks/conflict)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/conflict.ipynb
2025-06-30 10:38:08,016 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [demo-azure-blob](/icechunk-python/notebooks/demo-azure-blob)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [demo-azure-blob](/icechunk-python/notebooks/demo-azure-blob)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/demo-azure-blob.ipynb
2025-06-30 10:38:08,493 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [demo-dummy-data](/icechunk-python/notebooks/demo-dummy-data)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [demo-dummy-data](/icechunk-python/notebooks/demo-dummy-data)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/demo-dummy-data.ipynb
2025-06-30 10:38:09,149 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [demo-gcs](/icechunk-python/notebooks/demo-gcs)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [demo-gcs](/icechunk-python/notebooks/demo-gcs)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/demo-gcs.ipynb
2025-06-30 10:38:09,682 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [demo-s3](/icechunk-python/notebooks/demo-s3)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [demo-s3](/icechunk-python/notebooks/demo-s3)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/demo-s3.ipynb
2025-06-30 10:38:10,247 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [expiration](/icechunk-python/notebooks/expiration)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [expiration](/icechunk-python/notebooks/expiration)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/expiration.ipynb
2025-06-30 10:38:10,781 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [memorystore](/icechunk-python/notebooks/memorystore)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [memorystore](/icechunk-python/notebooks/memorystore)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/memorystore.ipynb
2025-06-30 10:38:11,298 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [version-control](/icechunk-python/notebooks/version-control)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [version-control](/icechunk-python/notebooks/version-control)
INFO    -  Converting notebook (execute=False): /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/version-control.ipynb
2025-06-30 10:38:11,950 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [performance](/icechunk-python/notebooks/performance) / [era5_xarray-Icechunk](/icechunk-python/notebooks/performance/era5_xarray-Icechunk)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [performance](/icechunk-python/notebooks/performance) / [era5_xarray-Icechunk](/icechunk-python/notebooks/performance/era5_xarray-Icechunk)
INFO    -  Converting notebook (execute=False):
           /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/performance/era5_xarray-Icechunk.ipynb
2025-06-30 10:38:12,615 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [performance](/icechunk-python/notebooks/performance) / [era5_xarray-zarr2](/icechunk-python/notebooks/performance/era5_xarray-zarr2)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [performance](/icechunk-python/notebooks/performance) / [era5_xarray-zarr2](/icechunk-python/notebooks/performance/era5_xarray-zarr2)
INFO    -  Converting notebook (execute=False):
           /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/performance/era5_xarray-zarr2.ipynb
2025-06-30 10:38:13,197 - mkdocs.plugins.breadcrumbs - INFO - Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) / [performance](/icechunk-python/notebooks/performance) / [era5_xarray-zarr3](/icechunk-python/notebooks/performance/era5_xarray-zarr3)
INFO    -  Generated breadcrumb string: [Home](/) / [icechunk-python](/icechunk-python) / [notebooks](/icechunk-python/notebooks) /
           [performance](/icechunk-python/notebooks/performance) / [era5_xarray-zarr3](/icechunk-python/notebooks/performance/era5_xarray-zarr3)
INFO    -  Converting notebook (execute=False):
           /Users/rabernat/gh/earth-mover/icechunk/docs/docs/icechunk-python/notebooks/performance/era5_xarray-zarr3.ipynb
Traceback (most recent call last):
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs_autorefs/_internal/plugin.py", line 484, in _get_urls
    return self._primary_url_map[identifier], "primary"
           ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^
KeyError: 'icechunk._icechunk_python.ConflictError'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs_autorefs/_internal/plugin.py", line 496, in _get_item_url
    urls, qualifier = self._get_urls(identifier)
                      ~~~~~~~~~~~~~~^^^^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs_autorefs/_internal/plugin.py", line 486, in _get_urls
    return self._secondary_url_map[identifier], "secondary"
           ~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^
KeyError: 'icechunk._icechunk_python.ConflictError'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1753, in _resolve_target
    resolved.resolve_target()
    ~~~~~~~~~~~~~~~~~~~~~~~^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1737, in resolve_target
    raise CyclicAliasError([self.target_path])
_griffe.exceptions.CyclicAliasError: Cyclic aliases detected:
  icechunk.ConflictError

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1753, in _resolve_target
    resolved.resolve_target()
    ~~~~~~~~~~~~~~~~~~~~~~~^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1740, in resolve_target
    self._resolve_target()
    ~~~~~~~~~~~~~~~~~~~~^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1755, in _resolve_target
    raise CyclicAliasError([self.target_path, *error.chain]) from error
_griffe.exceptions.CyclicAliasError: Cyclic aliases detected:
  icechunk._icechunk_python.ConflictError
  icechunk.ConflictError

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/bin/mkdocs", line 8, in <module>
    sys.exit(cli())
             ~~~^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/click/core.py", line 1442, in __call__
    return self.main(*args, **kwargs)
           ~~~~~~~~~^^^^^^^^^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/click/core.py", line 1363, in main
    rv = self.invoke(ctx)
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/click/core.py", line 1830, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
                           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/click/core.py", line 1226, in invoke
    return ctx.invoke(self.callback, **ctx.params)
           ~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/click/core.py", line 794, in invoke
    return callback(*args, **kwargs)
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs/__main__.py", line 288, in build_command
    build.build(cfg, dirty=not clean)
    ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs/commands/build.py", line 319, in build
    env = config.plugins.on_env(env, config=config, files=files)
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs/plugins.py", line 599, in on_env
    return self.run_event('env', env, config=config, files=files)
           ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs/plugins.py", line 566, in run_event
    result = method(item, **kwargs)
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs_autorefs/_internal/plugin.py", line 281, in on_env
    file.page.content, unmapped = fix_refs(
                                  ~~~~~~~~^
        file.page.content,
        ^^^^^^^^^^^^^^^^^^
    ...<4 lines>...
        _legacy_refs=self.legacy_refs,
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    )
    ^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs_autorefs/_internal/references.py", line 564, in fix_refs
    html = AUTOREF_RE.sub(
        fix_ref(url_mapper, unmapped, record_backlink, link_titles=link_titles, strip_title_tags=strip_title_tags),
        html,
    )
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs_autorefs/_internal/references.py", line 499, in inner
    url, original_title = _find_url(identifiers, url_mapper)
                          ~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs_autorefs/_internal/references.py", line 586, in _find_url
    return url_mapper(identifier)
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs_autorefs/_internal/plugin.py", line 539, in get_item_url
    url = self._get_item_url(identifier, from_url, fallback)
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocs_autorefs/_internal/plugin.py", line 502, in _get_item_url
    new_identifiers = fallback(identifier)
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocstrings/_internal/handlers/base.py", line 632, in get_anchors
    aliases = handler.get_aliases(identifier)
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/mkdocstrings_handlers/python/_internal/handler.py", line 354, in get_aliases
    for alias in [data.canonical_path, *data.aliases]:
                  ^^^^^^^^^^^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1469, in canonical_path
    return self.final_target.canonical_path
           ^^^^^^^^^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1708, in final_target
    target = target.target  # type: ignore[assignment]
             ^^^^^^^^^^^^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1673, in target
    self.resolve_target()
    ~~~~~~~~~~~~~~~~~~~^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1740, in resolve_target
    self._resolve_target()
    ~~~~~~~~~~~~~~~~~~~~^^
  File "/Users/rabernat/mambaforge/envs/icechunk-docs/lib/python3.13/site-packages/_griffe/models.py", line 1755, in _resolve_target
    raise CyclicAliasError([self.target_path, *error.chain]) from error
_griffe.exceptions.CyclicAliasError: Cyclic aliases detected:
  icechunk.ConflictError
  icechunk._icechunk_python.ConflictError
  icechunk.ConflictError

mpiannucci · 2025-07-01T10:33:53Z

I can update this today, I remember what is needed now I think

ianhi · 2025-07-02T20:06:50Z

docs/README.md

+pip install \
+mkdocs "mkdocs-material[imaging]" \
+mkdocs-include-markdown-plugin mkdocs-open-in-new-tab mkdocs-breadcrumbs-plugin \
+mkdocs-mermaid2-plugin mkdocs-minify-plugin mkdocs-awesome-pages-plugin \
+mkdocs-macros-plugin mkdocs-git-revision-date-localized-plugin mkdocstrings \
+mkdocstrings-python mkdocs-jupyter markdown-exec 
+```


I followed the instructions here and didn't seem to need this step.

did you possibly have multiple wheels built? I don't thnk the lss command we were using was sorting by date by default.

docs/README.md

ianhi · 2025-07-02T20:10:53Z

_griffe.exceptions.CyclicAliasError: Cyclic aliases detected:
icechunk.ConflictError
icechunk._icechunk_python.ConflictError
icechunk.ConflictError

I think this a real error. This is from the API generation, unrelated to the cell execution.

mpiannucci · 2025-07-02T20:12:50Z

Yeah I had this a long time ago and never figured out how to fix it.

ianhi · 2025-07-02T20:14:00Z

Yeah I had this a long time ago and never figured out how to fix it.

it's intermittent?

mpiannucci · 2025-07-02T20:19:01Z

It was permanent for me locally

Co-authored-by: Ian Hunt-Isaak <[email protected]>

update build instructions

31210f6

ianhi reviewed Jul 2, 2025

View reviewed changes

docs/README.md Outdated Show resolved Hide resolved

mpiannucci and others added 2 commits July 3, 2025 10:30

Update docs/README.md

4006b25

Co-authored-by: Ian Hunt-Isaak <[email protected]>

Merge branch 'main' into ryan/docs/update-doc-build-instructions

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