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{bio}[system] King v2.3.2 #22814

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Merged
merged 3 commits into from
May 1, 2025
Merged

{bio}[system] King v2.3.2 #22814

merged 3 commits into from
May 1, 2025

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asalois
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@asalois asalois commented Apr 28, 2025

King New Version

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github-actions bot commented Apr 28, 2025

Updated software king-2.3.2.eb

Diff against king-2.2.7.eb

easybuild/easyconfigs/k/king/king-2.2.7.eb

diff --git a/easybuild/easyconfigs/k/king/king-2.2.7.eb b/easybuild/easyconfigs/k/king/king-2.3.2.eb
index c8abb39b48..cdd51b66d2 100644
--- a/easybuild/easyconfigs/k/king/king-2.2.7.eb
+++ b/easybuild/easyconfigs/k/king/king-2.3.2.eb
@@ -1,3 +1,6 @@
+# Contribution from Montana State University
+# uploaded by Alex Salois
+
 # Contribution from the NIHR Biomedical Research Centre
 # Guy's and St Thomas' NHS Foundation Trust and King's College London
 # uploaded by J. Sassmannshausen
@@ -5,7 +8,7 @@
 easyblock = 'BinariesTarball'
 
 name = 'king'
-version = '2.2.7'
+version = '2.3.2'
 
 homepage = 'https://kingrelatedness.com/'
 description = """KING is a toolset that makes use of high-throughput
@@ -17,8 +20,8 @@ substructure identification, forensics, gene mapping, etc."""
 toolchain = SYSTEM
 
 source_urls = ['https://kingrelatedness.com/executables/']
-sources = ['Linux-%%(name)s%s.tar.gz' % version.replace('.', '')]
-checksums = ['8fcc5c7cce1df80f80dc3ace4e64c9047a4156e361f787d368a89f7e654231da']
+sources = [f'Linux-{name}{version.replace(".", "")}.tar.gz']
+checksums = ['cbe78fc5a3b35e05ded2e51a4491cf709026391ff4aa2db6186ca255f64e33a9']
 
 sanity_check_paths = {
     'files': ['bin/king'],
Diff against king-2.2.4.eb

easybuild/easyconfigs/k/king/king-2.2.4.eb

diff --git a/easybuild/easyconfigs/k/king/king-2.2.4.eb b/easybuild/easyconfigs/k/king/king-2.3.2.eb
index 48a7483302..cdd51b66d2 100644
--- a/easybuild/easyconfigs/k/king/king-2.2.4.eb
+++ b/easybuild/easyconfigs/k/king/king-2.3.2.eb
@@ -1,3 +1,6 @@
+# Contribution from Montana State University
+# uploaded by Alex Salois
+
 # Contribution from the NIHR Biomedical Research Centre
 # Guy's and St Thomas' NHS Foundation Trust and King's College London
 # uploaded by J. Sassmannshausen
@@ -5,7 +8,7 @@
 easyblock = 'BinariesTarball'
 
 name = 'king'
-version = '2.2.4'
+version = '2.3.2'
 
 homepage = 'https://kingrelatedness.com/'
 description = """KING is a toolset that makes use of high-throughput
@@ -17,8 +20,8 @@ substructure identification, forensics, gene mapping, etc."""
 toolchain = SYSTEM
 
 source_urls = ['https://kingrelatedness.com/executables/']
-sources = ['Linux-%%(name)s%s.tar.gz' % version.replace('.', '')]
-checksums = ['405e603875d04e19559598f2b27e5e8113d5b4424388a92fa0b40251897c592b']
+sources = [f'Linux-{name}{version.replace(".", "")}.tar.gz']
+checksums = ['cbe78fc5a3b35e05ded2e51a4491cf709026391ff4aa2db6186ca255f64e33a9']
 
 sanity_check_paths = {
     'files': ['bin/king'],

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jfgrimm commented May 1, 2025

@boegelbot: please test @ jsc-zen3

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@jfgrimm: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22814 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22814 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 6272

Test results coming soon (I hope)...

- notification for comment with ID 2844631119 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/fbd5515b3870d8d0247f2830f6c7ebb9 for a full test report.

@jfgrimm
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jfgrimm commented May 1, 2025

Test report by @jfgrimm
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node031.viking2.yor.alces.network - Linux Rocky Linux 8.9, x86_64, AMD EPYC 7643 48-Core Processor, Python 3.6.8
See https://gist.github.com/jfgrimm/74cc0e269b8555df8ffcc1bb15bc5f7f for a full test report.

@jfgrimm jfgrimm added this to the 5.0.1 milestone May 1, 2025
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jfgrimm commented May 1, 2025

Going in, thanks @asalois!

@jfgrimm jfgrimm merged commit 0835f33 into easybuilders:develop May 1, 2025
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3 participants