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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 44 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 36 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 27 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 18 4

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 17 14

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 14 2

Repositories

Showing 10 of 186 repositories
  • atlas-conda Public

    Internal conda recipes relevant for atlas but not of general interest to be in bioconda

    ebi-gene-expression-group/atlas-conda’s past year of commit activity
    Shell 0 0 0 3 Updated Apr 30, 2025
  • atlas-web-bulk Public

    Bulk Expression Atlas web application

    ebi-gene-expression-group/atlas-web-bulk’s past year of commit activity
    Java 1 Apache-2.0 1 48 5 Updated Apr 30, 2025
  • scxa-control-workflow Public

    Master Nextflow workflow for running each component of the SMART-seq and droplet SCXA pipelines

    ebi-gene-expression-group/scxa-control-workflow’s past year of commit activity
    R 4 2 4 1 Updated Apr 30, 2025
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 82 9 Updated Apr 29, 2025
  • atlas-web-core Public

    Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API

    ebi-gene-expression-group/atlas-web-core’s past year of commit activity
    Java 0 1 4 2 Updated Apr 29, 2025
  • bulk-recalculations Public

    Snakemake workflow for new experiments processing, reprocessing and recalculations steps

    ebi-gene-expression-group/bulk-recalculations’s past year of commit activity
    Python 0 1 17 (1 issue needs help) 1 Updated Apr 25, 2025
  • atlas-components Public

    Front end components of Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/atlas-components’s past year of commit activity
    JavaScript 3 3 13 1 Updated Apr 11, 2025
  • bioconductor-ExpressionAtlas Public

    Download datasets from EMBL-EBI Expression Atlas

    ebi-gene-expression-group/bioconductor-ExpressionAtlas’s past year of commit activity
    R 1 1 2 2 Updated Apr 10, 2025
  • atlas-k8s-ci-environment Public

    Collection of Kubernetes manifests for CI of Expression Atlas web applications

    ebi-gene-expression-group/atlas-k8s-ci-environment’s past year of commit activity
    Shell 1 Apache-2.0 1 2 2 Updated Apr 2, 2025
  • scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    ebi-gene-expression-group/scxa-workflows’s past year of commit activity
    Shell 14 Apache-2.0 2 6 1 Updated Apr 1, 2025
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