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Error cmd_info.json not created during Salmon depth estimation

Status: Open.

#36 In edgardomortiz/Captus;

· vincianem opened on Feb 10, 2026

Informed paralog filtering removes my outgroup

Status: Open.

#35 In edgardomortiz/Captus;

· DavCP opened on Dec 17, 2025

number of raw reads that used in each assembly

Status: Open.

#34 In edgardomortiz/Captus;

· shdbie91 opened on Dec 16, 2025

Inconsistent extraction across different Captus versions

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In edgardomortiz/Captus;

· DavCP opened on Nov 6, 2025

AttributeError: module 'urllib' has no attribute 'parse'

Status: Open.

#32 In edgardomortiz/Captus;

· korjent opened on Oct 10, 2025

Error on extraction stats report

Status: Open.

#31 In edgardomortiz/Captus;

· rcarrmart opened on Oct 6, 2025

Read files for samples run across multiple lanes

Status: Open.

#30 In edgardomortiz/Captus;

· mellamosummer opened on Aug 11, 2025

FAILED depth estimation (Salmon output not found)

Status: Open.

#29 In edgardomortiz/Captus;

· FuXiaogang-KIB opened on Jul 24, 2025

Error on alignment of extracted BUSCO genes

Status: Open.

#26 In edgardomortiz/Captus;

· MattB64 opened on May 14, 2025

Extraction memory usage on HPC

enhancementNew feature or requestNew feature or request

Status: Open.

#25 In edgardomortiz/Captus;

· bmichanderson opened on May 13, 2025

No assembly.fasta file after captus assemble command

Status: Open.

#24 In edgardomortiz/Captus;

· CaroSci opened on May 1, 2025

How to specify tmp_dir for megahit in the assembly step

Status: Open.

#22 In edgardomortiz/Captus;

· fpezzini opened on Apr 1, 2025