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[lwsinclair]

Hi there,

This pull request shares a security update on ensembl-mcp-server.

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MCP servers you can trust

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Here are our latest evaluation results of ensembl-mcp-server

Security Scan Results

Security Score: 78/100

Risk Level: moderate

Scan Date: 2025-06-13

Score starts at 100, deducts points for security issues, and adds points for security best practices

Detected Vulnerabilities

High Severity

• docker

  • ['dox', 'ejs', 'highlight.js', 'markdown-it', 'toc']
  • Fixed in version: unknown

• ejs

  • [{'source': 1089270, 'name': 'ejs', 'dependency': 'ejs', 'title': 'ejs template injection vulnerability', 'url': 'https://github.com/advisories/GHSA-phwq-j96m-2c2q', 'severity': 'critical', 'cwe': ['CWE-74'], 'cvss': {'score': 9.8, 'vectorString': 'CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:H/A:H'}, 'range': '<3.1.7'}, {'source': 1098366, 'name': 'ejs', 'dependency': 'ejs', 'title': 'ejs lacks certain pollution protection', 'url': 'https://github.com/advisories/GHSA-ghr5-ch3p-vcr6', 'severity': 'moderate', 'cwe': ['CWE-693', 'CWE-1321'], 'cvss': {'score': 4, 'vectorString': 'CVSS:3.1/AV:L/AC:L/PR:N/UI:N/S:U/C:N/I:N/A:L'}, 'range': '<3.1.10'}]
  • Fixed in version: unknown

• lodash

  • [{'source': 1085674, 'name': 'lodash', 'dependency': 'lodash', 'title': 'Regular Expression Denial of Service (ReDoS) in lodash', 'url': 'https://github.com/advisories/GHSA-x5rq-j2xg-h7qm', 'severity': 'moderate', 'cwe': ['CWE-400'], 'cvss': {'score': 0, 'vectorString': None}, 'range': '<4.17.11'}, {'source': 1094499, 'name': 'lodash', 'dependency': 'lodash', 'title': 'Prototype Pollution in lodash', 'url': 'https://github.com/advisories/GHSA-4xc9-xhrj-v574', 'severity': 'high', 'cwe': ['CWE-400'], 'cvss': {'score': 0, 'vectorString': None}, 'range': '<4.17.11'}, {'source': 1094500, 'name': 'lodash', 'dependency': 'lodash', 'title': 'Regular Expression Denial of Service (ReDoS) in lodash', 'url': 'https://github.com/advisories/GHSA-29mw-wpgm-hmr9', 'severity': 'moderate', 'cwe': ['CWE-400', 'CWE-1333'], 'cvss': {'score': 5.3, 'vectorString': 'CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:N/I:N/A:L'}, 'range': '<4.17.21'}, {'source': 1096305, 'name': 'lodash', 'dependency': 'lodash', 'title': 'Prototype Pollution in lodash', 'url': 'https://github.com/advisories/GHSA-p6mc-m468-83gw', 'severity': 'high', 'cwe': ['CWE-770', 'CWE-1321'], 'cvss': {'score': 7.4, 'vectorString': 'CVSS:3.1/AV:N/AC:H/PR:N/UI:N/S:U/C:N/I:H/A:H'}, 'range': '>=3.7.0 <4.17.19'}, {'source': 1096996, 'name': 'lodash', 'dependency': 'lodash', 'title': 'Command Injection in lodash', 'url': 'https://github.com/advisories/GHSA-35jh-r3h4-6jhm', 'severity': 'high', 'cwe': ['CWE-77', 'CWE-94'], 'cvss': {'score': 7.2, 'vectorString': 'CVSS:3.1/AV:N/AC:L/PR:H/UI:N/S:U/C:H/I:H/A:H'}, 'range': '<4.17.21'}, {'source': 1097130, 'name': 'lodash', 'dependency': 'lodash', 'title': 'Prototype Pollution in lodash', 'url': 'https://github.com/advisories/GHSA-fvqr-27wr-82fm', 'severity': 'moderate', 'cwe': ['CWE-471', 'CWE-1321'], 'cvss': {'score': 6.5, 'vectorString': 'CVSS:3.1/AV:N/AC:L/PR:L/UI:N/S:U/C:N/I:H/A:N'}, 'range': '<4.17.5'}, {'source': 1097140, 'name': 'lodash', 'dependency': 'lodash', 'title': 'Prototype Pollution in lodash', 'url': 'https://github.com/advisories/GHSA-jf85-cpcp-j695', 'severity': 'critical', 'cwe': ['CWE-20', 'CWE-1321'], 'cvss': {'score': 9.1, 'vectorString': 'CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:N/I:H/A:H'}, 'range': '<4.17.12'}]
  • Fixed in version: unknown

Medium Severity

• request

  • [{'source': 1096727, 'name': 'request', 'dependency': 'request', 'title': 'Server-Side Request Forgery in Request', 'url': 'https://github.com/advisories/GHSA-p8p7-x288-28g6', 'severity': 'moderate', 'cwe': ['CWE-918'], 'cvss': {'score': 6.1, 'vectorString': 'CVSS:3.1/AV:N/AC:L/PR:N/UI:R/S:C/C:L/I:L/A:N'}, 'range': '<=2.88.2'}, 'har-validator', 'hawk', 'tough-cookie']
  • Fixed in version: unknown

• sntp

  • ['hoek']
  • Fixed in version: unknown

• ajv

  • [{'source': 1097685, 'name': 'ajv', 'dependency': 'ajv', 'title': 'Prototype Pollution in Ajv', 'url': 'https://github.com/advisories/GHSA-v88g-cgmw-v5xw', 'severity': 'moderate', 'cwe': ['CWE-915', 'CWE-1321'], 'cvss': {'score': 5.6, 'vectorString': 'CVSS:3.1/AV:N/AC:H/PR:N/UI:N/S:U/C:L/I:L/A:L'}, 'range': '<6.12.3'}]
  • Fixed in version: unknown

• ... and 14 more medium severity vulnerabilities

This security assessment was conducted by MseeP.ai, an independent security validation service for MCP servers. Visit our website to learn more about our security reviews.