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Add ENA upload cli #156

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Update third_party_tools.rst
bedroesb Oct 2, 2023
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10 changes: 9 additions & 1 deletion faq/third_party_tools.rst
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Expand Up @@ -32,4 +32,12 @@ heard from users of them that they have been valuable.
Available for the conversion of annotated DNA multi-sequence alignments in
NEXUS format to an EMBL flat file suitable for submission via Webin-CLI. This
was developed by Michael Gruenstaeudl and a paper is available with additional
detail. DOI: https://doi.org/10.1093/bioinformatics/btaa209
detail. DOI: https://doi.org/10.1093/bioinformatics/btaa209

`ENA upload cli <https://github.com/usegalaxy-eu/ena-upload-cli>`_
Command line tool (CLI) allowing easy submission of data and respective
metadata to the European Nucleotide Archive (ENA) using tabular files or an
excel spreadsheet. The tool allows programatic submission of all ENA objects
(study, sample, run and experiment) without the need of logging in to the
Webin interface. This also includes client side validation using ENA checklists
and releasing the ENA objects.