This is a list of older, dated runs of EV-D68 using the Nextstrain build pipeline, as well as runs that were used in manuscript figures.
Full genome - 16 Nov 2025 - not yet run
VP1 - 16 Nov 2025
Full genome - 9 Feb 2025
VP1 - 9 Feb 2025
Full genome - 23 Jul 2024
VP1 - 29 May 2024
Note that both of these runs are from data downloads from end-April 2024
Full genome - 6 Sept 2022
VP1 - 6 Sept 2022
Full genome - 4 Sept 2022
VP1 - 4 Sept 2022
Full genome - 18 Feb 2022
VP1 - 16 Mar 2022
Full genome - 23 Jan 2020
VP1 - 23 Jan 2020
Full genome - 12 Dec 2019 - Restricted to sequences through 2018 (basis for the 2022 manuscript - see below)
VP1 - 17 Dec 2019 - Restricted to sequences through 2018 (basis for the 2022 manuscript - see below)
Hodcroft et al. 2022 - PLoS Pathogens
Figure 1: The VP1 tree is used in panel A; a specially-coloured full-genome tree is used in the zoom-in portions in panel B
Figure 2: The full-genome tree, zoomed to the B3 subclade is used in panel A [genome_2018-Fig2]
Figure 4: The VP1 tree coloured by the BC- and DE-Loops in panels D and E