Refactor package updates for audit vulnerabilities

[Copilot]

How the feature works? / How did you fix the issue?

npm audit reported vulnerable transitive packages across the workspace dependency tree.

• Dependency updates

  • Updated npm lockfile resolutions to remove reported audit vulnerabilities.
  • Added targeted overrides for vulnerable transitive packages where upstream packages have not yet released compatible updates.

• Compatibility fixes

  • Preserved compatible AJV, TypeScript, and type-package resolution for existing build/test tooling.
  • Added explicit ketcher-react root re-exports for existing public symbols consumed by workspace packages.

Check list

• unit-tests written
• e2e-tests written
• documentation updated
• PR name follows the pattern #1234 – issue name
• branch name doesn't contain '#'
• PR is linked with the issue
• base branch (master or release/xx) is correct
• task status changed to "Code review"
• reviewers are notified about the pull request