Skip to content
@epi2me-labs

EPI2ME

Bioinformatics resources from Oxford Nanopore Technologies Plc

EPI2ME Labs

Welcome to the EPI2ME GitHub organization! We develop and maintain open-source bioinformatics tools and workflows for Oxford Nanopore Technologies' data analysis.

About EPI2ME on GitHub

EPI2ME is a collection of bioinformatics tools, workflows, and resources designed to help researchers analyze nanopore sequencing data. Our projects focus on making cutting-edge analysis accessible and reproducible for the scientific community.

Our Tools and Workflows

We provide a variety of tools and workflows for:

  • Nextflow workflows: Production-ready bioinformatics pipelines
  • Utility tools: Command-line tools and libraries for nanopore data processing
  • Community resources: Documentation, tutorials, and examples

Getting Started

Visit epi2me.nanoporetech.com to explore our workflows and documentation.

Support

For questions and support:

Please note that repositories in this organization may not be proactively monitored for support requests. For more timely assistance, please use the resources above.

License

Individual repositories may have different licenses. Please refer to each repository's LICENSE file for specific terms.

Pinned Loading

  1. kraken2-server kraken2-server Public

    Kraken2 Server

    C++ 22 3

  2. wf-transcriptomes wf-transcriptomes Public

    Nextflow 107 44

  3. wf-single-cell wf-single-cell Public

    Python 99 46

  4. wf-bacterial-genomes wf-bacterial-genomes Public

    Small variant calling for haploid samples

    Python 47 21

  5. wf-human-variation wf-human-variation Public

    Nextflow 141 73

  6. fastcat fastcat Public

    Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

    C 49 4

Repositories

Showing 10 of 30 repositories

Most used topics

Loading…