Put transcriptome in first message#6

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moritzschaefer wants to merge 45 commits intomainfrom

put-transcriptome-in-first-message

Commits on Dec 23, 2023

Use shared LLM-embedding model to describe/annotate cells
moritzschaefer
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Implement LLM-embedding-based continuous cell visualization
moritzschaefer
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Loading of pytorch lightning model for LLM embeddings
moritzschaefer
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Adapted llm_obs_to_text() to use the single_cellm.validation.zero_shot.transcriptomes_to_scored_keywords implementation

tomazou-lab
authored and
moritzschaefer
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Fix/Refactor `llm_obs_to_text` to fit to the single-cellm repo
moritzschaefer
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Fix Cell->Text. With baseline unittest. Also don't load model (to save time debugging)
moritzschaefer
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refactor imports
moritzschaefer
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load_from_checkpoint with correct args
moritzschaefer
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Adapt LLM calling to up to date single-cellm state
moritzschaefer
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remove superfluous werkzeug dependency
moritzschaefer
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Commits on Dec 25, 2023

Commits on Jan 3, 2024

Commits on Jan 4, 2024

Commits on Jan 7, 2024

Commits on Jan 12, 2024

Minifix with single ceLLM API and prepare for more performant dataloading (#14)
moritzschaefer
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Commits on Jan 15, 2024

Commits on Jan 23, 2024

Use new 609 model
moritzschaefer
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Commits on Jan 25, 2024

Update used model. Use correct dataset-preloading-file now
moritzschaefer
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Commits on Jan 30, 2024

Move LLM-interface to the right (and more)
moritzschaefer
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Commits on Feb 10, 2024

Commits on Feb 12, 2024

Fix preprocessing (especially for keywords).
moritzschaefer
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Commits on Feb 14, 2024

rename to cellwhisperer
moritzschaefer
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Commits on Feb 15, 2024

Commits on Feb 17, 2024

Commits on Feb 18, 2024

Add CellWhisperer logo and fix wrong asset path in npm building
moritzschaefer
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Commits on Feb 21, 2024

Fix broken call to CellWhisperer API
moritzschaefer
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Commits on Mar 15, 2024

Extend API to allow JSON as return type
moritzschaefer
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Commits on Mar 20, 2024

Commits on Mar 22, 2024

Hallucination inializaiton method
moritzschaefer
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Commits on Mar 27, 2024

Fix button and enter behavior in chat
moritzschaefer
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Commits on Mar 31, 2024

Use the cellwhisperer icon
moritzschaefer
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