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Final publication#2

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DanieleBarreca wants to merge 9 commits into
masterfrom
final_publication
Open

Final publication#2
DanieleBarreca wants to merge 9 commits into
masterfrom
final_publication

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@DanieleBarreca

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Pull request with the updated pipeline for the publication. Main changes:

  • Kept only metadata of submitted samples
  • Added steps to split/merge files
  • Cleaned up configuration
  • Changed annotations.csv format to allow multiple lanes of multiple flowcells
  • Updated README

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