Fix #534: Add marginal model to model outline document#594
Fix #534: Add marginal model to model outline document#594seabbs merged 6 commits intoepinowcast:mainfrom
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Closes epinowcast#534. Adds a section describing the marginal model approach which integrates out latent variables analytically using the primarycensored package, with signposts to primarycensored vignettes for mathematical details. Co-authored-by: Sam Abbott <contact@samabbott.co.uk>
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Use \mathbb{P} instead of \mathrm{Pr} to match the rest of the
document, and lowercase p_{L,i}, p_{R,i} in the likelihood
denominator to match the latent model convention.
Co-authored-by: Sam Abbott <contact@samabbott.co.uk>
Co-authored-by: Sam Abbott <contact@samabbott.co.uk>
Co-authored-by: Sam Abbott <contact@samabbott.co.uk>
Highlight that efficiency gains come from removing latent variables, avoiding numerical integration with analytical solutions, and aggregating identical observations. Co-authored-by: Sam Abbott <contact@samabbott.co.uk>
Ask users to cite Park et al. when using the latent model and primarycensored when using the marginal model. Update README citation section to match. Co-authored-by: Sam Abbott <contact@samabbott.co.uk>
This is entirely from an agent so do not review until I have pinged for review as I will do a first pass
Summary
vignettes/model.Rmd)primarycensoredpackageprimarycensoredvignettes for mathematical detailsChanges
vignettes/model.Rmd: Added marginal model section after the latent model section, covering the shift-invariant likelihood, truncation normalisation, and aggregation advantagesTest plan
pkgdown::build_article("model")Closes #534
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