Move contact matrix transpose inside model functions - #271

Merged

joshwlambert merged 23 commits into

mainfrom

bahadzie/issue259

Jul 19, 2026

Commits on Jul 19, 2026

fix: transpose contact matrix in model_default function

bahadzie
authored and
joshwlambert
committed
fix: transpose contact matrix in model_vacamole function

bahadzie
authored and
joshwlambert
committed
fix: remove unnecessary contact matrix preparation in multiple vignettes and README

bahadzie
authored and
joshwlambert
committed
fix: remove transpose in contact matrix preparation across vignettes and README

bahadzie
authored and
joshwlambert
committed
fix: update contact matrix preparation to remove transpose across multiple test files

bahadzie
authored and
joshwlambert
committed
fix: remove transpose in contact matrix preparation across miscellaneous files

bahadzie
authored and
joshwlambert
committed
fix: update package version to 0.5.0 and add author

bahadzie
authored and
joshwlambert
committed
fix: update rownames assignment to use colnames of contact_matrix across multiple files

bahadzie
authored and
joshwlambert
committed
Automatic readme update

actions-user
authored and
joshwlambert
committed
fix: correct assignment operator for contact_matrix in model_vacamole function

bahadzie
authored and
joshwlambert
committed
fix: improve formatting in population class snapshots

bahadzie
authored and
joshwlambert
committed
fix indentation in model_default function signature
joshwlambert
committed
reverting package version to development version v0.4.0.9000
joshwlambert
committed
Automatic readme update

actions-user
authored and
joshwlambert
committed
update snapshots from demography and contact matrix formatting updates
joshwlambert
committed
update demography and contact matrix info in snapshots
joshwlambert
committed
remove duplicated package author in DESCRIPTION
joshwlambert
committed
add NEWS.md entry for contact matrix transpose update, relates #259
joshwlambert
committed
update function documentation for contact matrix for population
joshwlambert
committed
remove lingering matrix transpose in test-model_default.R
joshwlambert
committed
update epidemics.Rmd and modelling_interventions.Rmd info on contact matrix transpose, relates #259
joshwlambert
committed
update epidemics-package.Rd
joshwlambert
committed
update NAMESPACE
joshwlambert
committed

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Move contact matrix transpose inside model functions - #271

Move contact matrix transpose inside model functions#271
joshwlambert merged 23 commits into
mainfrom
bahadzie/issue259

Commits on Jul 19, 2026

fix: transpose contact matrix in model_default function

fix: transpose contact matrix in model_vacamole function

fix: remove unnecessary contact matrix preparation in multiple vignettes and README

fix: remove transpose in contact matrix preparation across vignettes and README

fix: update contact matrix preparation to remove transpose across multiple test files

fix: remove transpose in contact matrix preparation across miscellaneous files

fix: update package version to 0.5.0 and add author

fix: update rownames assignment to use colnames of contact_matrix across multiple files

Automatic readme update

fix: correct assignment operator for contact_matrix in model_vacamole function

fix: improve formatting in population class snapshots

fix indentation in model_default function signature

reverting package version to development version v0.4.0.9000

Automatic readme update

update snapshots from demography and contact matrix formatting updates

update demography and contact matrix info in snapshots

remove duplicated package author in DESCRIPTION

add NEWS.md entry for contact matrix transpose update, relates #259

update function documentation for contact matrix for population

remove lingering matrix transpose in test-model_default.R

update epidemics.Rmd and modelling_interventions.Rmd info on contact matrix transpose, relates #259

update epidemics-package.Rd

update NAMESPACE