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Bump the all-deps group with 23 updates - #382

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Bumps the all-deps group with 23 updates:

Package From To
numpy 2.4.6 2.5.0
scipy 1.17.1 1.18.0
docutils 0.22.4 0.23
pydata-sphinx-theme 0.19.0 0.8.0
jupyter-sphinx 0.5.3 0.4.0
sphinxcontrib-bibtex 2.7.0 2.5.0
jupytext 1.19.3 1.11.1
numpydoc 1.10.0 1.2.1
jinja2 3.1.6 3.0.3
myst-nb 1.4.0 0.8.4
pytest 9.1.0 9.1.1
pytest-memray 1.8.0 1.5.0
tox 4.55.1 4.56.1
alabaster 1.0.0 0.7.16
attrs 26.1.0 20.3.0
jsonschema 4.26.0 4.17.3
jupyter-cache 1.0.1 0.2.2
markdown-it-py 4.2.0 0.6.2
mdit-py-plugins 0.6.1 0.2.6
memray 1.19.3 1.10.0
myst-parser 5.1.0 0.13.6
rich 15.0.0 13.1.0
sqlalchemy 2.0.51 1.3.24

Updates numpy from 2.4.6 to 2.5.0

Release notes

Sourced from numpy's releases.

v2.5.0 (June 21, 2026)

NumPy 2.5.0 Release Notes

Numpy 2.5.0 is a transitional release. It drops support for Python 3.11, marking the end of distutils, and expires a large number of deprecations made in the 2.0.x release. It also improves free threading and brings sorting into compliance with the array-api standard with the addition of descending sorts. There is also a fair amount of preparation for Python 3.15, which will be supported starting with the first rc.

This release supports Python versions 3.12-3.14.

Highlights

  • Distutils has been removed,
  • Many expired deprecations, see below,
  • Many new deprecations, see below,
  • Many static typing improvements.
  • Improved support for free threading,
  • Support for descending sorts,

See New Features below for other additions.

Deprecations

  • numpy.char.chararray is deprecated. Use an ndarray with a string or bytes dtype instead.

    (gh-30605)

  • numpy.take now correctly checks if the result can be cast to the provided out=out under the same-kind rule. A DeprecationWarning is given now when this check fails. Previously, take incorrectly checked if out could be cast to the result (the wrong direction). This deprecation also affects compress and possibly other functions. (Future versions of NumPy may tighten the casting check further.)

    (gh-30615)

  • The numpy.char.[as]array functions are deprecated. Use an numpy.[as]array with a string or bytes dtype instead.

    (gh-30802)

  • Setting the dtype attribute is deprecated because mutating an array is unsafe if an array is shared, especially by multiple threads. As an alternative, you can create a view with a new dtype via array.view(dtype=new_dtype).

    (gh-29244)

... (truncated)

Changelog

Sourced from numpy's changelog.

This is a walkthrough of the NumPy 2.4.0 release on Linux, which will be the first feature release using the numpy/numpy-release <https://github.com/numpy/numpy-release>__ repository.

The commands can be copied into the command line, but be sure to replace 2.4.0 with the correct version. This should be read together with the :ref:general release guide <prepare_release>.

Facility preparation

Before beginning to make a release, use the requirements/*_requirements.txt files to ensure that you have the needed software. Most software can be installed with pip, but some will require apt-get, dnf, or whatever your system uses for software. You will also need a GitHub personal access token (PAT) to push the documentation. There are a few ways to streamline things:

  • Git can be set up to use a keyring to store your GitHub personal access token. Search online for the details.

Prior to release

Add/drop Python versions

When adding or dropping Python versions, multiple config and CI files need to be edited in addition to changing the minimum version in pyproject.toml. Make these changes in an ordinary PR against main and backport if necessary. We currently release wheels for new Python versions after the first Python RC once manylinux and cibuildwheel support that new Python version.

Backport pull requests

Changes that have been marked for this release must be backported to the maintenance/2.4.x branch.

Update 2.4.0 milestones

Look at the issues/prs with 2.4.0 milestones and either push them off to a later version, or maybe remove the milestone. You may need to add a milestone.

Check the numpy-release repo

... (truncated)

Commits
  • 6910b28 Merge pull request #31706 from charris/prepare-2.5.0-release
  • e0acd2b REL: Prepare for the NumPy 2.5.0 release.
  • 8d928b7 Merge pull request #31704 from charris/backport-31649
  • c2055ba MAINT: update openblas to 0.3.33.112.0 (#31649)
  • ce17c81 Merge pull request #31703 from charris/backport-31609
  • 3de6203 BUG: fix StringDType distinct-allocator bugs and add tests (#31609)
  • c723971 Merge pull request #31700 from charris/backport-31694
  • 64513b2 MAINT: Bump pypa/cibuildwheel from 3.4.1 to 4.1.0
  • 04707f0 Merge pull request #31698 from charris/try-fix-emscripten
  • 5cf0686 MAINT: Try to fix emscripten wheel build.
  • Additional commits viewable in compare view

Updates scipy from 1.17.1 to 1.18.0

Release notes

Sourced from scipy's releases.

SciPy 1.18.0 Release Notes

SciPy 1.18.0 is the culmination of 6 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s). Our development attention will now shift to bug-fix releases on the 1.18.x branch, and on adding new features on the main branch.

This release requires Python 3.12-3.14 and NumPy 2.0.0 or greater.

Highlights of this release

  • SciPy now supports three different build modes for BLAS and LAPACK LP64/ILP64 support, and machinery is provided for downstream cython_lapack consumers to gracefully handle LP64/ILP64 backend builds. ILP64 support has been substantially improved across the SciPy library.
  • Remaining Fortran to C translations have been completed---an experimental Fortran-free build option is now available to developers for testing purposes. Developer feedback is welcome on Fortran-free builds.
  • scipy.signal.whittaker_henderson now provides access to Whittaker-Henderson smoothing of a discrete signal.
  • A large number of scipy.stats functions now support lazy arrays and JAX JIT. Array API support has been improved substantially in SciPy, with at least 21 functions gaining new support in this release. 16 scipy.stats functions have also gained support for MArray input.

New features

scipy.fft improvements

  • SciPy's internal FFT backend has switched from pocketfft to its successor package ducc0.fft, which features several incremental improvements. The most significant of those from SciPy's perspective is probably that storage requirements for internally cached plans have been significantly reduced for most long 1D transforms. Plans that require more storage than 1MB will no longer be cached; this mainly affects huge 1D transforms of prime and near-prime sizes.

scipy.interpolate improvements

... (truncated)

Commits
  • 54ef542 REL: 1.18.0 release commit
  • a45e463 Merge pull request #25395 from tylerjereddy/treddy_prep_1.18.0_final
  • ee2442e TYP, MAINT, TST: PR 25395 revisions
  • 3225154 DOC: PR 25395 revisions
  • 14c7bd7 TYP: Fix mypy errors with pytest==9.1.0 (#25410)
  • 71522e9 DOC: revise SciPy 1.18.0 release notes
  • 92f8482 MAINT: fix errors from pytest 9.1 (#25378)
  • 7b27bf4 TST, MAINT: modernize spatial tests for pytest 10 (#25376)
  • d05b640 Merge pull request #25347 from tylerjereddy/treddy_version_bump_1.18.0rc3
  • e60fe8b REL: set to 1.18.0rc3 unreleased
  • Additional commits viewable in compare view

Updates docutils from 0.22.4 to 0.23

Commits

Updates pydata-sphinx-theme from 0.19.0 to 0.8.0

Commits

Updates jupyter-sphinx from 0.5.3 to 0.4.0

Commits
  • 23322c7 Merge pull request #204 from basnijholt/do-not-double-copy
  • d40b2ad add paragraph to styling section
  • d6ad4d3 add changelog entry
  • a0dcbd7 Do not overwrite files in _static if user already has custom versions of thos...
  • a74b13e Merge pull request #207 from basnijholt/fix-182
  • cfa0879 add deprecation warning
  • 75b003f add changelog entry
  • 4129ebe rename directives jupyter-download:script -> jupyter-download-script, similar...
  • d427c79 Merge pull request #206 from basnijholt/pre-commit
  • cac7aaa bump versions
  • Additional commits viewable in compare view

Updates sphinxcontrib-bibtex from 2.7.0 to 2.5.0

Changelog

Sourced from sphinxcontrib-bibtex's changelog.

2.7.0 (6 May 2026)

  • BACKWARD INCOMPATIBLE A new warning category, duplicate_local_citation, has been introduced. It is triggered when a duplicate citation appears within the same document. The existing duplicate_citation warning continues to report duplicates but now only across different documents.

    In many cases, users maintain a separate bibliography for each document (often using a docname in docnames filter). In such setups, duplicate citations across documents are usually acceptable, while duplicates within a single document are not. This distinction allows users to suppress duplicate_citation warnings while still receiving duplicate_local_citation warnings.

  • When there are duplicate citations, resolve locally first (reported by drbenvincent, see issue #385).

  • The usage section of the documentation now starts with in-depth general considerations to guide users towards best practice for the most common use cases.

  • Citation reference wrapper nodes now have a bibtex-citation CSS class, to enable Sphinx themes to style citation elements separately from other content (contributed by mmcky, see pull request #383).

  • Increase required pybtex-docutils version to 1.0.2 (reported by ego-thales).

  • Fix test suite for docutils 0.22 (fixed by mitya57, see pull request #377).

  • Dropped Python 3.9 support (EOL), added Python 3.14 support.

  • Fixed various deprecation warnings in Sphinx and docutils.

  • Improved header parsing.

  • Minimum required Sphinx version increased to 7.4.

  • Minimum required Docutils version increased to 0.20.

2.6.5 (27 June 2025)

  • Require pybtex 0.25 and remove setuptools dependency hack (fixed by flying-sheep, see pull request #372).

2.6.4 (17 June 2025)

  • Add Python 3.13 support.

... (truncated)

Commits

Updates jupytext from 1.19.3 to 1.11.1

Changelog

Sourced from jupytext's changelog.

1.19.3 (2026-05-17)

Fixed

  • The Jupytext CLI issues a warning when a notebook is not trusted. Also, trust is preserved when empty outputs are added (follow-up on #1505)

Changed

  • The dependabot config has been updated to correctly bump extension packages, now allowing only production updates and ignoring dev dependencies (#1532). Thanks to Mahendra Paipuri for this PR!
  • Removed deprecated stylelint packages (stylelint-config-prettier and stylelint-prettier) from the JupyterLab extension dependencies (#1530)
  • We have removed Python 3.9 testing from the CI (Python 3.9 reached EOL in October 2025)

1.19.2 (2026-05-10)

Fixed

  • Trusted notebooks remain trusted after jupytext --sync (#1505)
  • We have fixed the homepage link in package.json. Thanks to Michał Krassowski for making this PR (#1494)
  • Thanks to Brigitta Sipőcz for fixing a broken link in our CLI (#1428)
  • The --quiet flag now suppresses the creating missing directory warning when writing to a path that includes a prefix (#1533)

Changed

  • The CI workflow has been restructured to maximize parallelization. All test suites (pip, conda, UI) and the build step now run concurrently after pre-commit checks, instead of sequentially, reducing CI times (#1527)
  • We have skipped the tests that involve jupyterfs on Python 3.12+ as they started failing on the CI with no obvious way to fix them (#1509)
  • We have changed the configuration of Dependabot to get grouped dependency updates for our JupyterLab extension.
  • We have merged a series of Dependabot security updates: #1516, #1517, #1519, #1520, #1522, #1524

1.19.1 (2026-01-25)

Changed

  • Jupytext does not change the file icons anymore! Thanks to Michał Krassowski for finally solving this long standing issue! (#398)
  • We have bumped lodash from 4.17.21 to 4.17.23 in JupyterLab extension (#1483)
  • We require marimo<=0.19.4 in tests following a change in the location of the marimo import (#1485)

1.19.0 (2026-01-18)

Changed

  • The environment used to develop Jupytext is now maintained using Pixi (#1459)

Fixed

  • We have restored the support for .qmd documents in Jupyter (#1435)
  • We have fixed warnings about the cell ids like either Cell is missing an id field or Additional properties are not allowed ('id' was unexpected) when converting to some formats, including Pandoc (#1464)
  • We have updated the dependencies of the Jupytext extension for JupyterLab. Many thanks to Mahendra Paipuri for his PR (#1477)!

Added

... (truncated)

Commits
  • 4ae9263 Update format with format options in the notebook metadata (md:myst and md:pa...
  • 0a8b180 Normalize jupytext config options names (#754)
  • e28497a Use config in read and write functions (#753)
  • 593bcef Use non-random cell ids in tests (#751)
  • 58e8b27 Update the dependencies of the JupyterLab extension (#750)
  • 508be51 Version 1.10.2
  • c5e4bcc Rebuild the package in the Publish step
  • a3d5439 Version 1.10.2-rc0 (#745)
  • a5c4fa2 MANIFEST: Graft labextension and exclude node_modules (#741)
  • 7d45d0b Version 1.10.1 (#740)
  • Additional commits viewable in compare view

Updates numpydoc from 1.10.0 to 1.2.1

Changelog

Sourced from numpydoc's changelog.

1.2.1

Release date: 29 March 2022

Requires Python 3.7+ and Sphinx 1.8+.

Full Changelog <https://github.com/numpy/numpydoc/compare/numpydoc-1.2...HEAD>__

Implemented enhancements


-  Update year `[#370](https://github.com/numpy/numpydoc/issues/370) <https://github.com/numpy/numpydoc/pull/370>`__ (`jarrodmillman <https://github.com/jarrodmillman>`__)

Fixed bugs



-  Use consistent release tags `[#361](https://github.com/numpy/numpydoc/issues/361) &lt;https://github.com/numpy/numpydoc/pull/361&gt;`__ (`jarrodmillman &lt;https://github.com/jarrodmillman&gt;`__)
-  BUG: 1.2 raises error w.r.t. object has no attribute ‘\__name_\_’ `[#362](https://github.com/numpy/numpydoc/issues/362) &lt;https://github.com/numpy/numpydoc/issues/362&gt;`__
-  Use isgeneratorfunction to avoid false alarm YD01 validation `[#368](https://github.com/numpy/numpydoc/issues/368) &lt;https://github.com/numpy/numpydoc/pull/368&gt;`__ (`jnothman &lt;https://github.com/jnothman&gt;`__)
-  Fix AttributeError in underline length check `[#363](https://github.com/numpy/numpydoc/issues/363) &lt;https://github.com/numpy/numpydoc/pull/363&gt;`__ (`rossbar &lt;https://github.com/rossbar&gt;`__)
-  Upper bound jinja `[#369](https://github.com/numpy/numpydoc/issues/369) &lt;https://github.com/numpy/numpydoc/pull/369&gt;`__ (`jarrodmillman &lt;https://github.com/jarrodmillman&gt;`__)

Closed issues




    

  • Validation check YD01 not implemented properly [#365](https://github.com/numpy/numpydoc/issues/365) &lt;https://github.com/numpy/numpydoc/issues/365&gt;__
    • 

  • Support numpydoc validation without running sphinx [#364](https://github.com/numpy/numpydoc/issues/364) &lt;https://github.com/numpy/numpydoc/issues/364&gt;__
    • 

  • 1.2: change tagging convention? [#360](https://github.com/numpy/numpydoc/issues/360) &lt;https://github.com/numpy/numpydoc/issues/360&gt;__
    • 



1.2.0


Release date: 24 January 2022


Requires Python 3.7+ and Sphinx 1.8+.


Implemented enhancements

  • Document release process [#357](https://github.com/numpy/numpydoc/issues/357) <https://github.com/numpy/numpydoc/pull/357>__ (jarrodmillman <https://github.com/jarrodmillman>__)
  • Use setuptools [#349](https://github.com/numpy/numpydoc/issues/349) <https://github.com/numpy/numpydoc/pull/349>__ (jarrodmillman <https://github.com/jarrodmillman>__)
  • DOC: Switch docs to pydata-sphinx-theme [#313](https://github.com/numpy/numpydoc/issues/313) <https://github.com/numpy/numpydoc/pull/313>__ (rossbar <https://github.com/rossbar>__)
  • Improve error messages for see also parsing [#306](https://github.com/numpy/numpydoc/issues/306) <https://github.com/numpy/numpydoc/pull/306>__ (rossbar <https://github.com/rossbar>__)
  • ENH: Enable validation during sphinx-build process [#302](https://github.com/numpy/numpydoc/issues/302) <https://github.com/numpy/numpydoc/pull/302>__ (rossbar <https://github.com/rossbar>__)
  • Add a note to the docstring standard about long ‘See Also’ entries. [#300](https://github.com/numpy/numpydoc/issues/300) <https://github.com/numpy/numpydoc/pull/300>__ (WarrenWeckesser <https://github.com/WarrenWeckesser>__)
  • MAINT: minor refactoring in docscrape [#297](https://github.com/numpy/numpydoc/issues/297) <https://github.com/numpy/numpydoc/pull/297>__ (rossbar <https://github.com/rossbar>__)
  • ENH: Add configuration option for parameter cross-referencing [#295](https://github.com/numpy/numpydoc/issues/295) <https://github.com/numpy/numpydoc/pull/295>__ (rossbar <https://github.com/rossbar>__)
  • ENH: Better warning for sections. [#278](https://github.com/numpy/numpydoc/issues/278) <https://github.com/numpy/numpydoc/pull/278>__ (Carreau <https://github.com/Carreau>__)

... (truncated)

Commits

Updates jinja2 from 3.1.6 to 3.0.3

Changelog

Sourced from jinja2's changelog.

Version 3.1.6

Released 2025-03-05

  • The |attr filter does not bypass the environment's attribute lookup, allowing the sandbox to apply its checks. :ghsa:cpwx-vrp4-4pq7

Version 3.1.5

Released 2024-12-21

  • The sandboxed environment handles indirect calls to str.format, such as by passing a stored reference to a filter that calls its argument. :ghsa:q2x7-8rv6-6q7h
  • Escape template name before formatting it into error messages, to avoid issues with names that contain f-string syntax. :issue:1792, :ghsa:gmj6-6f8f-6699
  • Sandbox does not allow clear and pop on known mutable sequence types. :issue:2032
  • Calling sync render for an async template uses asyncio.run. :pr:1952
  • Avoid unclosed auto_aiter warnings. :pr:1960
  • Return an aclose-able AsyncGenerator from Template.generate_async. :pr:1960
  • Avoid leaving root_render_func() unclosed in Template.generate_async. :pr:1960
  • Avoid leaving async generators unclosed in blocks, includes and extends. :pr:1960
  • The runtime uses the correct concat function for the current environment when calling block references. :issue:1701
  • Make |unique async-aware, allowing it to be used after another async-aware filter. :issue:1781
  • |int filter handles OverflowError from scientific notation. :issue:1921
  • Make compiling deterministic for tuple unpacking in a {% set ... %} call. :issue:2021
  • Fix dunder protocol (copy/pickle/etc) interaction with Undefined objects. :issue:2025
  • Fix copy/pickle support for the internal missing object. :issue:2027
  • Environment.overlay(enable_async) is applied correctly. :pr:2061
  • The error message from FileSystemLoader includes the paths that were searched. :issue:1661
  • PackageLoader shows a clearer error message when the package does not contain the templates directory. :issue:1705
  • Improve annotations for methods returning copies. :pr:1880
  • urlize does not add mailto: to values like @a@b. :pr:1870

... (truncated)

Commits
  • 2a48dd8 Merge pull request #1543 from pallets/release-3.0.3
  • ce1a539 release version 3.0.3
  • 199b6d5 Merge pull request #1542 from pallets/package-loader-file
  • eec0db8 PackageLoader works with single module file
  • 46f3a68 Merge pull request #1541 from pallets/docs-pow-order
  • 0d19990 document chained pow order
  • 99daa2a Merge pull request #1540 from pallets/docs-macro-defaults
  • a6162da rewrite docs about extending template objects
  • cab5545 Merge pull request #1539 from pallets/docs-macro-defaults
  • 369ff03 remove reference to macro.defaults
  • Additional commits viewable in compare view

Updates myst-nb from 1.4.0 to 0.8.4

Changelog

Sourced from myst-nb's changelog.

Change Log

Commits

Updates pytest from 9.1.0 to 9.1.1

Release notes

Sourced from pytest's releases.

9.1.1

pytest 9.1.1 (2026-06-19)

Bug fixes

  • #14220: Fixed a logic bug in pytest.RaisesGroup which would might cause it to display incorrect "It matches FooError() which was paired with BarError" messages.
  • #14591: Fixed a regression in pytest 9.1.0 which caused overriding a parametrized fixture with an indirect @​pytest.mark.parametrize to fail with "duplicate parametrization of '<fixture name>'".
  • #14606: Fixed list-item typing errors from mypy in @pytest.mark.parametrize <pytest.mark.parametrize ref> argvalues parameter.
  • #14608: Fixed a regression in pytest 9.1.0 where conftest.py files located in <invocation dir>/test* were no longer loaded as initial conftests when invoked without arguments. This could cause certain hooks (like pytest_addoption) in these files to not fire.
Commits
  • cf470ec Prepare release version 9.1.1
  • e0c8ce6 Merge pull request #14625 from pytest-dev/patchback/backports/9.1.x/a07c31a97...
  • 1b82d16 Merge pull request #14624 from pytest-dev/patchback/backports/9.1.x/b375b79ec...
  • 501c4bc Merge pull request #14596 from bluetech/doc-classmethod
  • b61f588 Merge pull request #14622 from chrisburr/fix-14608-initial-conftest-test-subdir
  • 9a567e0 [automated] Update plugin list (#14617) (#14618)
  • ef8b299 Merge pull request #14620 from pytest-dev/patchback/backports/9.1.x/680f9f3ed...
  • 66abd07 Merge pull request #14220 from bysiber/fix-stale-iexp-raisesgroup
  • 79fbf93 Merge pull request #14612 from pytest-dev/patchback/backports/9.1.x/974ed48b6...
  • 0d312eb Merge pull request #14611 from bluetech/parametrize-argvalues-typing
  • Additional commits viewable in compare view

Updates pytest-memray from 1.8.0 to 1.5.0

Changelog

Sourced from pytest-memray's changelog.

v1.8.0 (2025-08-13)

Features - 1.8.0

- Python 3.14 is now officially supported. (:issue:`118`)

v1.7.0 (2024-07-25)


Bug Fixes - 1.7.0

  • Fix compatibility with anyio-based async test runners by using an async def wrapper when the decorated test is a coroutine function. (:issue:119)

v1.6.0 (2024-04-18)

Features - 1.6.0

- Add a new --fail-on-increase option that fails a test with the ``limit_memory`` marker if it uses more memory than its last successful run. (:issue:`91`)
- Use aggregated capture files, reducing the amount of temporary disk space required in order to run tests. (:issue:`107`)
- Add a new ``current_thread_only`` keyword argument to the ``limit_memory`` and
  ``limit_leaks`` markers to ignore all allocations made in threads other than
  the one running the test. (:issue:`117`)

Bug Fixes - 1.6.0

  • Fix the generation of histograms when the tests performed zero-byte allocations. (:issue:113)

v1.5.0 (2023-08-23)

Features - 1.5.0


- Add a new ``limit_leaks`` marker to check for memory leaks in tests. (:issue:`45`)
- Support passing ``--trace-python-allocators`` to memray to track all Python allocations. (:issue:`78` and :issue:`64`)

v1.4.1 (2023-06-06)


Bug Fixes - 1.4.1

  • Fix long test names with xdis (:issue:68)

v1.4.0 (2022-12-02)

Features - 1.4.0

... (truncated)

Commits
  • 0e33179 Add a new marker to check for memory leaks (#52)
  • b25d4b8 Bump pypa/gh-action-pypi-publish from 1.8.7 to 1.8.10
  • f889d26 docs(README.md): fix the bulleted lists
  • 78c2b07 Bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7
  • 8fd5a43 Use ruff instead of flake8 + isort
  • ad9b759 Complete the documentation for the configuration file options
  • 9fc6c5c Support passing --trace-python-allocators to memray
  • 10a354f Relax the sizes in the 'test_limit_memory_marker_with_pytest_xdist' test
  • 6a2c733 docs: Document options --stacks and --native
  • e839fff Update usage.rst
  • Additional commits viewable in compare view

Updates tox from 4.55.1 to 4.56.1

Release notes

Sourced from tox's releases.

v4.56.1

What's Changed

New Contributors

Full Changelog: tox-dev/tox@4.56.0...4.56.1

v4.56.0

What's Changed

New Contributors

Full Changelog: tox-dev/tox@4.55.1...4.56.0

Changelog

Sourced from tox's changelog.

Bug fixes - 4.56.1

  • Fix { replace = "if" ... extend = true } corrupting the resulting list when then or else is a scalar string (e.g. then = "-v"): a non-empty scalar string is now appended as a single element instead of being iterated character-by-character, while a false if with no else (yielding "") contributes nothing rather than an empty element, and list/set results are still spread into the parent. (:issue:3969)

v4.56.0 (2026-06-23)

Features - 4.56.0

  • Derive :ref:virtualenv_spec automatically: when an environment targets a Python version the installed :pypi:virtualenv can no longer create (e.g. py38 with virtualenv 21.5+), tox now pins the newest virtualenv that still supports it and bootstraps it for that environment only. The downgrade happens only when every base_python candidate is unsupported, so environments targeting current interpreters are unaffected. This fixes py38 (and other end-of-life interpreters) being silently skipped after a virtualenv upgrade - by :user:gaborbernat. (:issue:3965) (:issue:3965)

Bug fixes - 4.56.0

  • The default value of skip_missing_interpreters changed from True to False — missing interpreters now fail the run by default, matching tox 3 behavior. The tox 4 rewrite unintentionally changed this default. To restore the previous (incorrect) behavior, set skip_missing_interpreters = true in your tox configuration or pass --skip-missing-interpreters on the command line. (:issue:3965)

Improved documentation - 4.56.0

  • Fix nested list items being rendered with continued numbering instead of as sub-items in development.rst, onboarding.rst and explanation.rst. (:issue:3960)
  • Replace stale http://tox.readthedocs.org URL with https://tox.wiki in pyproject.toml (Homepage), .github/CONTRIBUTING.md, and .github/PULL_REQUEST_TEMPLATE.md. (:issue:3963)

v4.55.1 (2026-06-03)

Commits

Updates alabaster from 1.0.0 to 0.7.16

Changelog

Sourced from alabaster's changelog.

:git_tag:1.0.0 -- 2024-07-26

  • Dropped support for Python 3.9 and earlier.
  • Dropped support for Sphinx 6.1 and earlier.
  • Use a new SVG image for the GitHub banner.
  • :feature:217 Use the new searchfield component for the search box. Patch by Tim Hoffmann.
  • :feature:104 Allow translating strings in relations.html.
  • 🐛125 Do not underline linked images. Patch by Joshua Bronson.
  • 🐛169 Do not ignore the Pygments background colour. Patch by Matthias Geier.
  • 🐛174 Fix clipping caused by incorrect CSS breakpoints.

:git_tag:0.7.16 -- 2024-01-10

  • 🐛215 Do not display logo_name if it is set to False.

:git_tag:0.7.15 -- 2024-01-08

  • :feature:213 Allow an arbitrary string in the logo_name option.
  • :feature:114 Improved sidebar CSS styles.
  • :issue:178 Deprecated canonical_url in favor of html_baseurl.
  • 🐛200 Removed duplicate <meta name="viewport" ... /> tag.
  • 🐛188 Removed underline from whitespace.
  • 🐛164 Removed type="text/javascript" from elements.
  • 🐛161 Replaced &copy; with unicode decimal code entity [#169](https://github.com/sphinx-doc/alabaster/issues/169);.

:git_tag:0.7.14 -- 2024-01-08

  • Dropped support for Python 3.8 and earlier.
  • Dropped support for Sphinx 3.3 and earlier.
  • :issue:198 Fix horizontal s...

    Description has been truncated

@dependabot
Bump the all-deps group with 23 updates
824e5a8 
Bumps the all-deps group with 23 updates:

| Package | From | To |
| --- | --- | --- |
| [numpy](https://github.com/numpy/numpy) | `2.4.6` | `2.5.0` |
| [scipy](https://github.com/scipy/scipy) | `1.17.1` | `1.18.0` |
| [docutils](https://github.com/rtfd/recommonmark) | `0.22.4` | `0.23` |
| [pydata-sphinx-theme](https://github.com/pydata/pydata-sphinx-theme) | `0.19.0` | `0.8.0` |
| [jupyter-sphinx](https://github.com/jupyter/jupyter-sphinx) | `0.5.3` | `0.4.0` |
| [sphinxcontrib-bibtex](https://github.com/mcmtroffaes/sphinxcontrib-bibtex) | `2.7.0` | `2.5.0` |
| [jupytext](https://github.com/jupytext/jupytext) | `1.19.3` | `1.11.1` |
| [numpydoc](https://github.com/numpy/numpydoc) | `1.10.0` | `1.2.1` |
| [jinja2](https://github.com/pallets/jinja) | `3.1.6` | `3.0.3` |
| [myst-nb](https://github.com/executablebooks/myst-nb) | `1.4.0` | `0.8.4` |
| [pytest](https://github.com/pytest-dev/pytest) | `9.1.0` | `9.1.1` |
| [pytest-memray](https://github.com/bloomberg/pytest-memray) | `1.8.0` | `1.5.0` |
| [tox](https://github.com/tox-dev/tox) | `4.55.1` | `4.56.1` |
| [alabaster](https://github.com/sphinx-doc/alabaster) | `1.0.0` | `0.7.16` |
| [attrs](https://github.com/python-attrs/attrs) | `26.1.0` | `20.3.0` |
| [jsonschema](https://github.com/python-jsonschema/jsonschema) | `4.26.0` | `4.17.3` |
| [jupyter-cache](https://github.com/executablebooks/jupyter-cache) | `1.0.1` | `0.2.2` |
| [markdown-it-py](https://github.com/executablebooks/markdown-it-py) | `4.2.0` | `0.6.2` |
| [mdit-py-plugins](https://github.com/executablebooks/mdit-py-plugins) | `0.6.1` | `0.2.6` |
| [memray](https://github.com/bloomberg/memray) | `1.19.3` | `1.10.0` |
| [myst-parser](https://github.com/executablebooks/MyST-Parser) | `5.1.0` | `0.13.6` |
| [rich](https://github.com/Textualize/rich) | `15.0.0` | `13.1.0` |
| [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) | `2.0.51` | `1.3.24` |


Updates `numpy` from 2.4.6 to 2.5.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.4.6...v2.5.0)

Updates `scipy` from 1.17.1 to 1.18.0
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.17.1...v1.18.0)

Updates `docutils` from 0.22.4 to 0.23
- [Changelog](https://github.com/readthedocs/recommonmark/blob/master/CHANGELOG.md)
- [Commits](https://github.com/rtfd/recommonmark/commits)

Updates `pydata-sphinx-theme` from 0.19.0 to 0.8.0
- [Release notes](https://github.com/pydata/pydata-sphinx-theme/releases)
- [Changelog](https://github.com/pydata/pydata-sphinx-theme/blob/main/RELEASE.md)
- [Commits](pydata/pydata-sphinx-theme@v0.19.0...v0.8.0)

Updates `jupyter-sphinx` from 0.5.3 to 0.4.0
- [Release notes](https://github.com/jupyter/jupyter-sphinx/releases)
- [Changelog](https://github.com/jupyter/jupyter-sphinx/blob/main/RELEASE.md)
- [Commits](jupyter/jupyter-sphinx@v0.5.3...v0.4.0)

Updates `sphinxcontrib-bibtex` from 2.7.0 to 2.5.0
- [Changelog](https://github.com/mcmtroffaes/sphinxcontrib-bibtex/blob/develop/CHANGELOG.rst)
- [Commits](mcmtroffaes/sphinxcontrib-bibtex@2.7.0...2.5.0)

Updates `jupytext` from 1.19.3 to 1.11.1
- [Release notes](https://github.com/jupytext/jupytext/releases)
- [Changelog](https://github.com/jupytext/jupytext/blob/main/CHANGELOG.md)
- [Commits](jupytext/jupytext@v1.19.3...v1.11.1)

Updates `numpydoc` from 1.10.0 to 1.2.1
- [Release notes](https://github.com/numpy/numpydoc/releases)
- [Changelog](https://github.com/numpy/numpydoc/blob/v1.2.1/doc/release_notes.rst)
- [Commits](numpy/numpydoc@v1.10.0...v1.2.1)

Updates `jinja2` from 3.1.6 to 3.0.3
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)
- [Commits](pallets/jinja@3.1.6...3.0.3)

Updates `myst-nb` from 1.4.0 to 0.8.4
- [Release notes](https://github.com/executablebooks/myst-nb/releases)
- [Changelog](https://github.com/executablebooks/MyST-NB/blob/main/CHANGELOG.md)
- [Commits](executablebooks/MyST-NB@v1.4.0...v0.8.4)

Updates `pytest` from 9.1.0 to 9.1.1
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@9.1.0...9.1.1)

Updates `pytest-memray` from 1.8.0 to 1.5.0
- [Release notes](https://github.com/bloomberg/pytest-memray/releases)
- [Changelog](https://github.com/bloomberg/pytest-memray/blob/main/docs/news.rst)
- [Commits](bloomberg/pytest-memray@v1.8.0...1.5.0)

Updates `tox` from 4.55.1 to 4.56.1
- [Release notes](https://github.com/tox-dev/tox/releases)
- [Changelog](https://github.com/tox-dev/tox/blob/main/docs/changelog.rst)
- [Commits](tox-dev/tox@4.55.1...4.56.1)

Updates `alabaster` from 1.0.0 to 0.7.16
- [Release notes](https://github.com/sphinx-doc/alabaster/releases)
- [Changelog](https://github.com/sphinx-doc/alabaster/blob/master/docs/changelog.rst)
- [Commits](sphinx-doc/alabaster@1.0.0...0.7.16)

Updates `attrs` from 26.1.0 to 20.3.0
- [Release notes](https://github.com/python-attrs/attrs/releases)
- [Changelog](https://github.com/python-attrs/attrs/blob/main/CHANGELOG.md)
- [Commits](python-attrs/attrs@26.1.0...20.3.0)

Updates `jsonschema` from 4.26.0 to 4.17.3
- [Release notes](https://github.com/python-jsonschema/jsonschema/releases)
- [Changelog](https://github.com/python-jsonschema/jsonschema/blob/main/CHANGELOG.rst)
- [Commits](python-jsonschema/jsonschema@v4.26.0...v4.17.3)

Updates `jupyter-cache` from 1.0.1 to 0.2.2
- [Release notes](https://github.com/executablebooks/jupyter-cache/releases)
- [Changelog](https://github.com/executablebooks/jupyter-cache/blob/main/CHANGELOG.md)
- [Commits](executablebooks/jupyter-cache@v1.0.1...v0.2.2)

Updates `markdown-it-py` from 4.2.0 to 0.6.2
- [Release notes](https://github.com/executablebooks/markdown-it-py/releases)
- [Changelog](https://github.com/executablebooks/markdown-it-py/blob/master/CHANGELOG.md)
- [Commits](executablebooks/markdown-it-py@v4.2.0...v0.6.2)

Updates `mdit-py-plugins` from 0.6.1 to 0.2.6
- [Release notes](https://github.com/executablebooks/mdit-py-plugins/releases)
- [Changelog](https://github.com/executablebooks/mdit-py-plugins/blob/master/CHANGELOG.md)
- [Commits](executablebooks/mdit-py-plugins@v0.6.1...v0.2.6)

Updates `memray` from 1.19.3 to 1.10.0
- [Release notes](https://github.com/bloomberg/memray/releases)
- [Changelog](https://github.com/bloomberg/memray/blob/main/NEWS.rst)
- [Commits](bloomberg/memray@v1.19.3...1.10.0)

Updates `myst-parser` from 5.1.0 to 0.13.6
- [Release notes](https://github.com/executablebooks/MyST-Parser/releases)
- [Changelog](https://github.com/executablebooks/MyST-Parser/blob/master/CHANGELOG.md)
- [Commits](executablebooks/MyST-Parser@v5.1.0...v0.13.6)

Updates `rich` from 15.0.0 to 13.1.0
- [Release notes](https://github.com/Textualize/rich/releases)
- [Changelog](https://github.com/Textualize/rich/blob/main/CHANGELOG.md)
- [Commits](Textualize/rich@v15.0.0...v13.1.0)

Updates `sqlalchemy` from 2.0.51 to 1.3.24
- [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases)
- [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst)
- [Commits](https://github.com/sqlalchemy/sqlalchemy/commits)

---
updated-dependencies:
- dependency-name: numpy
  dependency-version: 2.5.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: scipy
  dependency-version: 1.18.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: docutils
  dependency-version: '0.23'
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: pydata-sphinx-theme
  dependency-version: 0.8.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: jupyter-sphinx
  dependency-version: 0.4.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: sphinxcontrib-bibtex
  dependency-version: 2.5.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: jupytext
  dependency-version: 1.11.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: numpydoc
  dependency-version: 1.2.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: jinja2
  dependency-version: 3.0.3
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: myst-nb
  dependency-version: 0.8.4
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: all-deps
- dependency-name: pytest
  dependency-version: 9.1.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: all-deps
- dependency-name: pytest-memray
  dependency-version: 1.5.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: tox
  dependency-version: 4.56.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: alabaster
  dependency-version: 0.7.16
  dependency-type: indirect
  update-type: version-update:semver-major
  dependency-group: all-deps
- dependency-name: attrs
  dependency-version: 20.3.0
  dependency-type: indirect
  update-type: version-update:semver-major
  dependency-group: all-deps
- dependency-name: jsonschema
  dependency-version: 4.17.3
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: jupyter-cache
  dependency-version: 0.2.2
  dependency-type: indirect
  update-type: version-update:semver-major
  dependency-group: all-deps
- dependency-name: markdown-it-py
  dependency-version: 0.6.2
  dependency-type: indirect
  update-type: version-update:semver-major
  dependency-group: all-deps
- dependency-name: mdit-py-plugins
  dependency-version: 0.2.6
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: memray
  dependency-version: 1.10.0
  dependency-type: indirect
  update-type: version-update:semver-minor
  dependency-group: all-deps
- dependency-name: myst-parser
  dependency-version: 0.13.6
  dependency-type: indirect
  update-type: version-update:semver-major
  dependency-group: all-deps
- dependency-name: rich
  dependency-version: 13.1.0
  dependency-type: indirect
  update-type: version-update:semver-major
  dependency-group: all-deps
- dependency-name: sqlalchemy
  dependency-version: 1.3.24
  dependency-type: indirect
  update-type: version-update:semver-major
  dependency-group: all-deps
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jul 8, 2026
@larsevj larsevj closed this Jul 8, 2026
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This pull request was built based on a group rule. Closing it will not ignore any of these versions in future pull requests.

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@larsevj
larsevj deleted the dependabot/uv/all-deps-f868a52ead branch July 8, 2026 09:58
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