v1.3.0

What's Changed

• Bump urllib3 from 2.6.3 to 2.7.0 in the uv group across 1 directory by @dependabot[bot] in #349
• Add permissions to workflows by @eivindjahren in #350
• Migrate tooling from tox to uv by @eivindjahren in #351
• Use myst for markdown and upgrade urllib by @eivindjahren in #352
• Specify lower bound version for nbconvert to 7.17.1 by @xjules in #353
• Bump the all-deps group with 5 updates by @dependabot[bot] in #355
• Test that standardize->assimilate->invert == assimilate by @tommyod in #356
• Bump the all-deps group across 1 directory with 22 updates by @dependabot[bot] in #358
• Bump actions/checkout from 6.0.2 to 6.0.3 by @dependabot[bot] in #361
• Group dependabot updates by @berland in #364
• Bump astral-sh/setup-uv from 8.1.0 to 8.2.0 by @dependabot[bot] in #360
• Enforce good ordering in ESMDA by @tommyod in #366
• Copy over EnIF code by @tommyod in #367
• EnIF by @tommyod in #365
• Copy test files for precest and linreg from graphite-maps by @tommyod in #370
• EnIF tests by @tommyod in #371
• Bump actions/checkout from 6.0.3 to 7.0.0 in the all-actions group by @dependabot[bot] in #372
• Cleanups and maintenance by @larsevj in #374
• Bump actions/setup-python from 6.2.0 to 6.3.0 in the all-actions group by @dependabot[bot] in #376
• Reduce dependabot activity by @berland in #379
• Fallback to gesvd in invert_subspace on failure by @larsevj in #381
• Update uv lockfile by @larsevj in #387

New Contributors

• @xjules made their first contribution in #353

Full Changelog: v1.2.0...v1.3.0

v1.2.0

What's Changed

• Harden calc_rho_for_2d_grid_layer input validation by @dafeda in #337
• Remove row-scaling API, tests, and stale snapshot artifacts by @dafeda in #338
• Remove DistanceESMDA in favor of LocalizedESMDA by @dafeda in #339
• Bump pillow from 12.1.1 to 12.2.0 in the uv group across 1 directory by @dependabot[bot] in #341
• Bump pytest from 9.0.2 to 9.0.3 in the uv group across 1 directory by @dependabot[bot] in #342
• Delete calculation of rho by @dafeda in #340
• Pin actions to hashes by @eivindjahren in #343
• Bump lxml from 6.0.2 to 6.1.0 in the uv group across 1 directory by @dependabot[bot] in #344
• Fix typo in docstring of invert_subspace by @dafeda in #345
• Bump pypa/gh-action-pypi-publish from 1.13.0 to 1.14.0 by @dependabot[bot] in #346
• Add support for custom perturbed observations in ESMDA by @dafeda in #348

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• Parallelize adaptive ESMDA update loops with joblib by @dafeda in #335
• Bump requests from 2.32.5 to 2.33.0 in the uv group across 1 directory by @dependabot[bot] in #336

Full Changelog: v1.0.0...v1.1.0

v1.0.0

What's Changed

• Localized ESMDA by @tommyod in #282
• Update LocalizedESMDA defaults to what paper recommends by @tommyod in #285
• Warn if dividing by zero when computing covar (obs<=1) by @tommyod in #284
• ESMDA vs. lESMDA on dense covariance by @tommyod in #288
• FIX: minor typo in SIES init docstring by @antoinecollet5 in #290
• More stringent test tolerances for LocalizedESMDA by @tommyod in #287
• Write about exact and subspace inversion by @tommyod in #291
• Snapshot test for ESMDA by @tommyod in #293
• Remove "inversion" arg from ESMDA by @tommyod in #292
• Test that LocalizedESMDA is scale invariant by @tommyod in #295
• Change from zero observations to slight noise to make tests more robust by @tommyod in #296
• Update an outdated test and harden test limits by @tommyod in #297
• Delete SIES by @tommyod in #299
• Less memory in tests by @tommyod in #294
• Mask missing parameters in some realizations by @tommyod in #298
• Add 'missing' argument to ESMDA by @tommyod in #300
• Bump actions/download-artifact from 7 to 8 by @dependabot[bot] in #303
• Bump actions/upload-artifact from 6 to 7 by @dependabot[bot] in #304
• Bump lxml-html-clean from 0.4.3 to 0.4.4 in the uv group across 1 directory by @dependabot[bot] in #305
• Remove Python version restriction on gaussianfft dependency by @dafeda in #306
• Move and refactor AdaptiveESMDA by @tommyod in #301
• Add paper reference by @tommyod in #310
• Verify positive distances by @tommyod in #311
• Revert behavoir of AdaptiveESMDA so it is backwards compatible by @tommyod in #309
• Widen parameter dtype from float64 to any float in assimilate_batch by @dafeda in #315
• Widen np.double to np.floating for parameter annotations by @dafeda in #316
• Add copy parameter to assimilate_batch for in-place updates by @dafeda in #319
• Fix type annotations and bugs for mypy compatibility by @dafeda in #318
• Clarify error messages in masked_std and adjust_for_missing by @dafeda in #317
• Fast groupby by @dafeda in #314
• Rename copy to overwrite and write tests for it by @tommyod in #320
• Change all type hints from 'double' (float64) to general 'floating' by @tommyod in #323
• Validate positive values in 1D covariance arrays by @dafeda in #325
• Fix error message formatting by @dafeda in #327
• Tighten up ruff by @berland in #328
• Remove stale comment in docstring by @dafeda in #329
• Rename dtrtrs to trtrs to avoid misleading precision prefix by @dafeda in #326
• Bump tornado from 6.5.4 to 6.5.5 in the uv group across 1 directory by @dependabot[bot] in #330
• Write about assumptions and limitations by @tommyod in #260
• Bump memray from 1.19.1 to 1.19.2 in the uv group across 1 directory by @dependabot[bot] in #331
• Remove unused functions and clean up a test by @tommyod in #333
• TaperedAdaptiveESMDA by @tommyod in #332
• Callbacks are functions or strings, never None. by @tommyod in #334
• Add a test for calc_rho_for_2d_grid_layer by @frode-aarstad in #307
• Allow parameters (X) to use a different dtype than observations in ESMDA by @dafeda in #324

Full Changelog: v0.6.0...v1.0.0

v0.6.0

What's Changed

• Remove no update by @frode-aarstad in #265
• Standardize docstrings to NumPy format by @dafeda in #264
• Remove update_params_1D by @dafeda in #271
• Clean-up of test_update_params_3D by @dafeda in #272
• Add full doctest to ESMDA class by @tommyod in #274
• Remove memory_usage_decorator from experimental module by @dafeda in #270
• Fix DistanceESMDA.assimilate() to use per-iteration alpha values by @dafeda in #266
• Use X instead of X_prior by @dafeda in #273
• Remove unused transform utils functions by @dafeda in #276
• Refactor batch assimilation consistency test by @dafeda in #280
• Update readme by @dafeda in #277
• Bump nbconvert from 6.5.4 to 7.17.0 in the uv group across 1 directory by @dependabot[bot] in #281
• Bump pillow from 12.1.0 to 12.1.1 in the uv group across 1 directory by @dependabot[bot] in #283

Full Changelog: v0.5.1...v0.6.0

v0.5.1

What's Changed

• Make test_sies compatible with scipy 1.16 and 1.17 by @berland in #249
• Support Python 3.14 by @berland in #250
• Solve and enforce ruff pytest rules by @berland in #251
• Bump actions/download-artifact from 6 to 7 by @dependabot[bot] in #241
• Bump actions/upload-artifact from 5 to 6 by @dependabot[bot] in #242
• Add new tests to DistanceESMDA including check for convergence by @oddvarlia in #252
• Remove testing for py3.9 and py3.10 by @frode-aarstad in #257
• Replace print statements with logging by @frode-aarstad in #255
• Update DistanceESMDA with additional functions by @oddvarlia in #254
• D docstring in ESMDA by @tommyod in #258

New Contributors

• @frode-aarstad made their first contribution in #257

Full Changelog: v0.5.0...v0.5.1

v0.5.0

What's Changed

• Update pre-commit by @berland in #244
• Add distance based esmda algorithm by @oddvarlia in #240
• Fix low hanging ruff fruits by @berland in #248

New Contributors

• @berland made their first contribution in #244
• @oddvarlia made their first contribution in #240

Full Changelog: v0.4.2...v0.5.0

v0.4.2

What's Changed

• Set up dependabot for github actions by @HakonSohoel in #235
• Bump actions/checkout from 4 to 6 by @dependabot[bot] in #239
• Bump actions/setup-python from 5 to 6 by @dependabot[bot] in #238
• Bump actions/upload-artifact from 4 to 5 by @dependabot[bot] in #237
• Bump actions/download-artifact from 4 to 6 by @dependabot[bot] in #236

New Contributors

• @HakonSohoel made their first contribution in #235
• @dependabot[bot] made their first contribution in #239

Full Changelog: v0.4.1...v0.4.2

v0.4.1

What's Changed

• Fix hanging multiprocess in example by @tommyod in #234
• Remove overwrite bug in SVD by @tommyod in #233

Full Changelog: v0.4.0...v0.4.1

v0.4.0

What's Changed

• Maintenance upgrade of github actions and pre-commits by @larsevj in #226
• Run adaptive localization in parallel by @dafeda in #228

New Contributors

• @larsevj made their first contribution in #226

Full Changelog: v0.3.0...v0.4.0