cnvkit/.github/workflows/docker-build.yml at master · etal/cnvkit · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
name: Docker Build and Push

on:
  push:
    branches:
      - master
    tags:
      - 'v*.*.*'
  pull_request:
    branches:
      - master
    paths:
      - 'Dockerfile'
      - 'conda-env.yml'
      - '.github/workflows/docker-build.yml'

env:
  DOCKER_IMAGE: etal/cnvkit
  # Alternative: ghcr.io/${{ github.repository_owner }}/cnvkit

jobs:
  build-and-push:
    name: Build and Push Docker Image
    runs-on: ubuntu-latest
    permissions:
      contents: read
      packages: write  # For GitHub Container Registry

    steps:
      - name: Checkout repository
        uses: actions/checkout@v6
        with:
          fetch-depth: 0  # Full history for version info

      - name: Set up Docker Buildx
        uses: docker/setup-buildx-action@v4

      - name: Log in to Docker Hub
        if: github.event_name != 'pull_request'
        uses: docker/login-action@v4
        with:
          username: ${{ secrets.DOCKER_USERNAME }}
          password: ${{ secrets.DOCKER_PASSWORD }}

      # Uncomment to enable GitHub Container Registry as backup
      # - name: Log in to GitHub Container Registry
      #   if: github.event_name != 'pull_request'
      #   uses: docker/login-action@v4
      #   with:
      #     registry: ghcr.io
      #     username: ${{ github.actor }}
      #     password: ${{ secrets.GITHUB_TOKEN }}

      - name: Extract version from tag
        id: version
        run: |
          if [[ $GITHUB_REF == refs/tags/v* ]]; then
            VERSION=${GITHUB_REF#refs/tags/v}
            echo "version=${VERSION}" >> $GITHUB_OUTPUT
            echo "is_release=true" >> $GITHUB_OUTPUT
          else
            echo "version=devel" >> $GITHUB_OUTPUT
            echo "is_release=false" >> $GITHUB_OUTPUT
          fi

      - name: Docker metadata
        id: meta
        uses: docker/metadata-action@v6
        with:
          images: ${{ env.DOCKER_IMAGE }}
          tags: |
            # Tag with version on release tags (e.g., v0.9.13 -> 0.9.13)
            type=semver,pattern={{version}}
            # Tag with major.minor on release tags (e.g., v0.9.13 -> 0.9)
            type=semver,pattern={{major}}.{{minor}}
            # Tag as 'latest' on release tags
            type=raw,value=latest,enable=${{ startsWith(github.ref, 'refs/tags/v') }}
            # Tag as 'devel' on master branch commits
            type=raw,value=devel,enable=${{ github.ref == 'refs/heads/master' }}
          labels: |
            org.opencontainers.image.title=CNVkit
            org.opencontainers.image.description=Copy number variant detection from high-throughput sequencing
            org.opencontainers.image.vendor=Eric Talevich

      - name: Build and push Docker image
        uses: docker/build-push-action@v7
        with:
          context: .
          file: ./Dockerfile
          push: ${{ github.event_name != 'pull_request' }}
          tags: ${{ steps.meta.outputs.tags }}
          labels: ${{ steps.meta.outputs.labels }}
          platforms: linux/amd64,linux/arm64
          cache-from: type=gha
          cache-to: type=gha,mode=max
          build-args: |
            CNVKIT_VERSION=${{ steps.version.outputs.is_release == 'true' && steps.version.outputs.version || '' }}

      - name: Docker image digest
        if: github.event_name != 'pull_request'
        run: |
          echo "Image pushed with tags:"
          echo "${{ steps.meta.outputs.tags }}"