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[bug report] "cnvkit.py call" can not accept "purity" and "-m clonal" at the same time Claude Code #454: Issue comment #424 (comment) created by etal
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CNVkit antitarget AttributeError: 'Namespace' object has no attribute 'interval' BUG Claude Code #453: Issue comment #806 (comment) created by etal
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CNVkit coverage takes too long on CRAM file Claude Code #452: Issue comment #759 (comment) created by etal
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Script to calculate alt allele freqs at given VCF positions Claude Code #451: Issue comment #364 (comment) created by etal
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segment with cbs method - threshold Claude Code #450: Issue comment #905 (comment) created by etal
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autobin command -o parameter Claude Code #449: Issue comment #358 (comment) created by etal
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Missing access hg38 bed file Claude Code #448: Issue comment #591 (comment) created by etal
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For paired-WGS, is it necessary step of markduplicates by PICARD? Claude Code #447: Issue comment #825 (comment) created by etal
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guess_baits.py into target triggers "TypeError: sequence item 0: expected str instance, numpy.float64 found" error Claude Code #446: Issue comment #766 (comment) created by etal
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Autobin Claude Code #445: Issue comment #802 (comment) created by etal
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different capture kits for normal and tumor samples? Claude Code #444: Issue comment #560 (comment) created by etal
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CNVkit antitarget AttributeError: 'Namespace' object has no attribute 'interval' BUG Claude Code #443: Issue comment #806 (comment) created by etal
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negative number in cn column of *call.cns Claude Code #442: Issue comment #831 (comment) created by etal
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CRAM support and potential differences between BAM, MarkDuplicates CRAM, and BQSR-recalibrated CRAM Claude Code #441: Issue comment #1105 (comment) created by etal
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cnvkit.py batch with custom pon early exit 0 Claude Code #440: Issue comment #916 (comment) created by etal
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Calculating non-integer copy number variations Claude Code #439: Issue comment #839 (comment) created by etal
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GISTIC overlapp issue Claude Code #438: Issue comment #786 (comment) created by etal
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Runtime error while running batch process Claude Code #437: Issue comment #777 (comment) created by etal
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Errors in fix.py Claude Code #436: Issue comment #740 (comment) created by etal
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Error running test Claude Code #435: Issue comment #661 (comment) created by etal
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Scatter plot seems to have noise Claude Code #434: Issue comment #617 (comment) created by etal
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genemetrics does not output statistics Claude Code #433: Issue comment #577 (comment) created by etal
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cnvkit.py fix Claude Code #432: Issue comment #561 (comment) created by etal
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Skipped
cnvkit fix requires old pandas version Claude Code #431: Issue comment #549 (comment) created by etal
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Bin log2 ratios missing due to preceding gc-masked bins Claude Code #430: Issue comment #547 (comment) created by etal
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