cnvkit.py fix

[yuanlizhanshi]

When i use cnvkit.py fix method, i can't find the output file. the input files was follow the pipeline
cnvkit.py fix qinJSmarkdup.targetcoverage.cnn qinJSmarkdup.antitargetcoverage.cnn cnv_reference.cnn > qinJS.cnr
the screen output was
andas(chromosome='BMSK_chr9', start=17310276, end=17310402)
Pandas(chromosome='BMSK_chr9', start=17310276, end=17310402)
Pandas(chromosome='BMSK_chr9', start=17311416, end=17312937)
Pandas(chromosome='BMSK_chr9', start=17311416, end=17312937)
Pandas(chromosome='BMSK_chr9', start=17311416, end=17312937)
....etc

[yuanlizhanshi]

the output file 'qinJS.cnr' can't find

[etal]

Old, no repro, abandoned; related duplicate-coordinate handling. Closing as stale — please reopen with a reproduction on a current release if this is still relevant.