Error in library("DNAcopy") : there is no package called \xe2\x80\x98DNAcopy\xe2\x80\x99\nExecution halted\n'

[Asfetaw]

Hi
This issue is related with segmentation. I am using python 3.8. CNVkit installed using pip install CNVkit,

[tskir]

Hi @Asfetaw, this means that you don't have the R DNAcopy package installed in your environment. Please see the instructions to install it here: https://github.com/etal/cnvkit#r-dependencies

[tskir]

Hi @Asfetaw, just wanted to check if you were able to resolve this issue? I'll be happy to help if something still isn't working for you.

[etal]

Answered with install instructions; environment setup, no code work. Closing as answered — please reopen, or open a new issue, if a concrete problem remains.

For general usage questions, we now use GitHub Discussions (Q&A): https://github.com/etal/cnvkit/discussions