GISTIC overlapp issue

[hanico888]

Dear GISTIC users.
Im beginner to GISTIC, and I have faced overlapped issues in CNVanalysis using GISTIC online, my file is a CNV of Colon cancer from TCGA.

this is a few lines of error:
Warning: Shortened 60 segments in '/opt/gpcloud/gp_home/users/Hanico88/uploads/tmp/run4785456974432728835.tmp/seg.file/1/111.txt' that overlap by one marker.
[�> In make_D_from_segseq_data at 122
In run_gistic2_from_seg at 193
In gp_gistic2_from_seg at 97]

would you please help me solve this issue?

[etal]

This concerns the external GISTIC tool rather than CNVkit itself, so there is nothing actionable here on our side. Closing; please follow up with the GISTIC maintainers. For CNVkit usage questions, see https://github.com/etal/cnvkit/discussions