GitHub - fbudin69500/MakeAtlasScripts: Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics.

fbudin69500 / MakeAtlasScripts Public

Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics.

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Name		Name	Last commit message	Last commit date
Latest commit History 298 Commits
2-Registration		2-Registration
3-BrainMaskComputation		3-BrainMaskComputation
3.1-BrainMaskComputation-ANTS		3.1-BrainMaskComputation-ANTS
3.2-BrainMaskComputation-RATS		3.2-BrainMaskComputation-RATS
3.5-SkullStripping		3.5-SkullStripping
4-AverageCreation		4-AverageCreation
4.1-AverageCreation-ANTS		4.1-AverageCreation-ANTS
4.45-AverageGeneration		4.45-AverageGeneration
4.5-AverageWithHFields		4.5-AverageWithHFields
5-AverageSegmentation		5-AverageSegmentation
6-Warp		6-Warp
6.1-BRAINSDemonWarp		6.1-BRAINSDemonWarp
7-Stats		7-Stats
Config		Config
Killdevil		Killdevil
ShellScripts		ShellScripts
BCReadme.txt		BCReadme.txt
CMakeLists.txt		CMakeLists.txt
MakeAtlasReadme.txt		MakeAtlasReadme.txt
SSReadme.txt		SSReadme.txt
WarpReadme.txt		WarpReadme.txt