GitHub - fethallah/neurons: Automatically exported from code.google.com/p/neurons

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Automatically exported from code.google.com/p/neurons

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Name		Name	Last commit message	Last commit date
Latest commit History 80 Commits
CellsDetection		CellsDetection
Common		Common
Evaluation		Evaluation
FeaturesExtraction		FeaturesExtraction
Geodesics		Geodesics
GreedyTracking		GreedyTracking
IO		IO
NeuritesDetection		NeuritesDetection
NeuritesTracking		NeuritesTracking
frangi_filter_version2a		frangi_filter_version2a
gaimc		gaimc
PathsToDatasets-10X-Final1.txt		PathsToDatasets-10X-Final1.txt
PathsToDatasets-10X-Final2.txt		PathsToDatasets-10X-Final2.txt
Readme.txt		Readme.txt
processListOfPlates.m		processListOfPlates.m
processPlate.m		processPlate.m
setpaths.m		setpaths.m
trkTracking.m		trkTracking.m

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======================================================
Synergia Computer Vision pipeline
F. Benmansour and K. Smith
======================================================

1- Prerequisites:
    	a- vlfeat 0.9.16 available at http://www.vlfeat.org/download/vlfeat-0.9.16-bin.tar.gz
	b- Enter the Geodesics directory and run from matlab "compile_mex"

2- The code have been organised into many subdirectories:
  	Common
	IO
	CellsDetection
	GreedyTracking
	Geodesics
	NeuritesDetection
	NeuritesTracking
	FeaturesExtraction
	frangi_filter_version2a
	gaimc

3- The most important functions and scripts are:
 	a- trkTracking : to be run for one single sequence
	b- processPlate.m
	c- processListOfPlates.m