fix: fix build order and simplify workflows

.changeset/config.json

@@ -12,7 +12,8 @@
     "@fiberplane/mcp-gateway-types",
     "@fiberplane/mcp-gateway-core",
     "@fiberplane/mcp-gateway-server",
-    "@fiberplane/mcp-gateway-cli"
+    "@fiberplane/mcp-gateway-cli",
+    "@fiberplane/mcp-gateway-api"
   ],
   "packages": ["packages/*"]
 }

.github/workflows/ci.yml

@@ -42,10 +42,4 @@ jobs:
         run: bun run lint
 
       - name: Build packages
-        run: |
-          bun run --filter @fiberplane/mcp-gateway-web build
-          bun run --filter @fiberplane/mcp-gateway-types build
-          bun run --filter @fiberplane/mcp-gateway-core build
-          bun run --filter @fiberplane/mcp-gateway-api build
-          bun run --filter @fiberplane/mcp-gateway-server build
-          bun run --filter @fiberplane/mcp-gateway-cli build
+        run: bun run build

.github/workflows/release.yml

@@ -12,9 +12,9 @@ permissions:
   id-token: write
 
 jobs:
-  # Check and build library packages (types, core, server)
+  # Build the libraries
   build-libs:
-    name: Build library packages
+    name: Build packages
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
@@ -37,36 +37,13 @@ jobs:
       - name: Lint
         run: bun run lint
 
-      - name: Build library packages
-        run: |
-          bun run --filter @fiberplane/mcp-gateway-types build
-          bun run --filter @fiberplane/mcp-gateway-core build
-          bun run --filter @fiberplane/mcp-gateway-server build
-
-  # Build CLI source package
-  build-cli:
-    name: Build CLI package
-    runs-on: ubuntu-latest
-    needs: build-libs
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v4
-
-      - name: Setup Bun
-        uses: oven-sh/setup-bun@v2
-        with:
-          bun-version: latest
-
-      - name: Install dependencies
-        run: bun install --frozen-lockfile
-
-      - name: Build CLI package
-        run: bun run --filter @fiberplane/mcp-gateway-cli build
+      - name: Build all packages
+        run: bun run build
 
   # Build platform-specific binaries
   build-binaries:
     name: Build ${{ matrix.platform }} binary
-    needs: build-cli
+    needs: build-libs
     strategy:
       matrix:
         include:
@@ -87,6 +64,9 @@ jobs:
       - name: Install dependencies
         run: bun install --frozen-lockfile --verbose
 
+      - name: Build web and CLI packages
+        run: bun run --filter @fiberplane/mcp-gateway-web build && bun run --filter @fiberplane/mcp-gateway-cli build
+
       - name: Build binary for ${{ matrix.platform }}
         run: bun run build:binaries
 

.gitignore

@@ -51,3 +51,7 @@ packages/mcp-gateway/src/version.ts
 # Binary packages (compiled executables)
 packages/mcp-gateway-*/mcp-gateway
 packages/mcp-gateway-*/mcp-gateway.exe
+packages/mcp-gateway-*/public
+packages/mcp-gateway-*/drizzle
+
+deps.svg

AGENTS.md

@@ -84,13 +84,14 @@ This is a Bun workspace monorepo containing the MCP Gateway project. The reposit
 ### Development Commands
 - `bun install` - Install all workspace dependencies
 - `bun run dev` - Start development mode (filters to CLI package)
-- `bun run build` - Build CLI package (filters to main package)
+- `bun run build` - Build all packages in dependency order (types → core → api → server → web → cli)
 - `bun run build:binaries` - Build platform-specific binaries (current platform or --all)
 - `bun run clean` - Clean all dist folders
+- `bun test` - Run all tests across workspace
 - `bun run typecheck` - Type check all packages
-- `bun run lint` - Lint all files
-- `bun run format` - Format all files
-- `bun run check-circular` - Check for circular dependencies
+- `bun run lint` - Lint all files with Biome
+- `bun run format` - Format all files with Biome
+- `bun run check-circular` - Check for circular dependencies (both within and between packages)
 - `bun run deps-graph` - Generate dependency graph (deps.svg)
 
 ### Package-Specific Commands

package.json

@@ -8,16 +8,16 @@
   ],
   "scripts": {
     "dev": "bun run --filter @fiberplane/mcp-gateway-cli dev",
-    "build": "bun run --filter @fiberplane/mcp-gateway-cli build",
+    "build": "bun run --filter @fiberplane/mcp-gateway-types build && bun run --filter @fiberplane/mcp-gateway-core build && bun run --filter @fiberplane/mcp-gateway-api build && bun run --filter @fiberplane/mcp-gateway-server build && bun run --filter @fiberplane/mcp-gateway-web build && bun run --filter @fiberplane/mcp-gateway-cli build",
     "build:types": "bun run --filter @fiberplane/mcp-gateway-cli build:types",
     "build:binaries": "bun run scripts/build-binaries.ts",
     "clean": "rm -rf packages/*/dist",
     "test": "bun test",
     "typecheck": "bun run --filter '*' typecheck",
     "lint": "biome ci .",
     "format": "biome check --write .",
-    "check-circular": "madge --circular --extensions ts,tsx packages/*/src",
-    "deps-graph": "madge --image deps.svg --extensions ts,tsx packages/*/src",
+    "check-circular": "madge --circular --extensions ts,tsx --ts-config ./tsconfig.madge.json packages/*/src",
+    "deps-graph": "madge --image deps.svg --extensions ts,tsx --ts-config ./tsconfig.madge.json packages/*/src",
     "changeset": "changeset",
     "release": "changeset publish",
     "ci:version": "changeset version && bun update",

packages/core/src/logs/migrations.ts

@@ -15,6 +15,31 @@ let migrationPromise: Promise<void> | null = null;
  * Works in both development and production builds
  */
 function getMigrationsFolder(): string {
+  // Detect if we're running as a compiled binary
+  // In compiled binaries, Bun.main starts with "/$bunfs/root/" (virtual bundled filesystem)
+  const isCompiledBinary = Bun.main.startsWith("/$bunfs/root/");
+
+  if (isCompiledBinary) {
+    // In compiled binary: migrations are in drizzle/ folder next to executable
+    const binaryDrizzleDir = join(process.execPath, "..", "drizzle");
+    const journalPath = join(binaryDrizzleDir, "meta", "_journal.json");
+
+    try {
+      const journalFile = Bun.file(journalPath);
+      if (journalFile.size > 0) {
+        return binaryDrizzleDir;
+      }
+    } catch {
+      throw new Error(
+        `Migrations folder not found in binary distribution at: ${binaryDrizzleDir}`,
+      );
+    }
+
+    throw new Error(
+      `Invalid migrations folder in binary distribution at: ${binaryDrizzleDir}`,
+    );
+  }
+
   // In development: packages/core/src/logs/migrations.ts
   // Migrations are in: packages/core/drizzle
   const currentFile = fileURLToPath(import.meta.url);
@@ -45,7 +70,7 @@ export async function ensureMigrations(
   migrationPromise = (async () => {
     try {
       const migrationsFolder = getMigrationsFolder();
-      await migrate(db, { migrationsFolder });
+      migrate(db, { migrationsFolder });
     } catch (err) {
       // Reset promise to allow retry
       migrationPromise = null;

packages/mcp-gateway-darwin-arm64/package.json

@@ -9,7 +9,9 @@
     "arm64"
   ],
   "files": [
-    "mcp-gateway"
+    "mcp-gateway",
+    "public",
+    "drizzle"
   ],
   "publishConfig": {
     "access": "public"

packages/mcp-gateway-linux-x64/package.json

@@ -3,7 +3,9 @@
   "version": "0.4.2",
   "description": "MCP Gateway binary for linux-x64 (placeholder - overwritten by build)",
   "files": [
-    "mcp-gateway"
+    "mcp-gateway",
+    "public",
+    "drizzle"
   ],
   "publishConfig": {
     "access": "public"

scripts/build-binaries.ts

@@ -70,14 +70,24 @@ mcp-gateway.exe
     await $`chmod +x ${pkgDir}/mcp-gateway`;
   }
 
+  // Copy public folder with web UI files
+  const publicSrc = "./packages/cli/public";
+  const publicDest = join(pkgDir, "public");
+  await $`cp -r ${publicSrc} ${publicDest}`;
+
+  // Copy drizzle migrations folder
+  const drizzleSrc = "./packages/core/drizzle";
+  const drizzleDest = join(pkgDir, "drizzle");
+  await $`cp -r ${drizzleSrc} ${drizzleDest}`;
+
   // Create package.json
   const pkgJson = {
     name: `@fiberplane/mcp-gateway-${platform.name}`,
     version: VERSION,
     description: `MCP Gateway binary for ${platform.os}-${platform.cpu}`,
     os: [platform.os],
     cpu: [platform.cpu],
-    files: [`mcp-gateway${platform.ext}`],
+    files: [`mcp-gateway${platform.ext}`, "public", "drizzle"],
     publishConfig: {
       access: "public",
     },

tsconfig.madge.json

@@ -0,0 +1,17 @@
+{
+  "extends": "./tsconfig.json",
+  "compilerOptions": {
+    "paths": {
+      "@fiberplane/mcp-gateway-types": ["./packages/types/src/index.ts"],
+      "@fiberplane/mcp-gateway-types/*": ["./packages/types/src/*"],
+      "@fiberplane/mcp-gateway-core": ["./packages/core/src/index.ts"],
+      "@fiberplane/mcp-gateway-core/*": ["./packages/core/src/*"],
+      "@fiberplane/mcp-gateway-api": ["./packages/api/src/index.ts"],
+      "@fiberplane/mcp-gateway-api/*": ["./packages/api/src/*"],
+      "@fiberplane/mcp-gateway-server": ["./packages/server/src/index.ts"],
+      "@fiberplane/mcp-gateway-server/*": ["./packages/server/src/*"],
+      "@fiberplane/mcp-gateway-cli": ["./packages/mcp-gateway/src/index.ts"],
+      "@fiberplane/mcp-gateway-cli/*": ["./packages/mcp-gateway/src/*"]
+    }
+  }
+}