bio-streams

examples

To run the fqcheck example program with read files r1.fq.gz and f2.fq.gz:

$ cargo build --example fqcheck --release
$ target/release/examples/fqcheck r1.fq.gz r2.fq.gz

input streams:

• fastq
• fasta
• TODO sam/bam
• TODO gfa

todo:

• quality score trait, Phred alias for u8
• futures::streams for async
• GAT lending iterator
• benchmark
• examples