test_package_coverage.yml

name: Test package

on:
  pull_request:
  push:
    branches: [main]

jobs:
  test-code:
    name: Test on ${{ matrix.container }}
    runs-on: ubuntu-24.04
    container: ${{ matrix.container }}
    env:
      DEB_PYTHON_INSTALL_LAYOUT: deb_system

    strategy:
      fail-fast: false
      matrix:
        container: [
          "ghcr.io/fenics/dolfinx/dolfinx:stable",
          "ghcr.io/fenics/dolfinx/dolfinx:nightly"
        ]

    steps:
      - uses: actions/checkout@v6

      - name: Install build dependencies
        run: |
          python3 -m pip install -r https://raw.githubusercontent.com/scientificcomputing/scifem/refs/heads/main/build-requirements.txt

      - name: Install development versions of dependencies
        if: ${{ matrix.container == 'ghcr.io/fenics/dolfinx/dolfinx:nightly' }}
        run: |
          python3 -m pip install git+https://github.com/scientificcomputing/io4dolfinx.git
          python3 -m pip install git+https://github.com/scientificcomputing/scifem.git --no-build-isolation
          python3 -m pip install git+https://github.com/ComputationalPhysiology/cardiac-geometriesx.git

      - name: Install package
        run: |
          python3 -m pip install scifem --no-build-isolation
          python3 -m pip install .[test]

      - name: Run tests
        run: python3 -m pytest -m "not benchmark"

      - name: Extract Coverage
        run: |
          python3 -m coverage report | sed 's/^/    /' >> $GITHUB_STEP_SUMMARY
          python3 -m coverage json
          export TOTAL=$(python3 -c "import json;print(json.load(open('coverage.json'))['totals']['percent_covered_display'])")
          echo "total=$TOTAL" >> $GITHUB_ENV

      - name: Upload HTML report.
        if: ${{ matrix.container == 'ghcr.io/fenics/dolfinx/dolfinx:stable' }}
        uses: actions/upload-artifact@v7
        with:
          name: html-report
          path: htmlcov