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28 changes: 24 additions & 4 deletions Utilities/Python/fdsplotlib.py
Original file line number Diff line number Diff line change
Expand Up @@ -67,8 +67,16 @@ def dataplot(config_filename,**kwargs):
plot_range_in = kwargs.get('plot_range')
plot_range = range(plot_range_in[0]-2,plot_range_in[-1]-1)

# Rebuild the default NA strings *excluding* 'N/A'
default_na = {
'', '#N/A', '#N/A N/A', '#NA', '-1.#IND', '-1.#QNAN',
'1.#IND', '1.#QNAN', '<NA>', 'NA', 'NULL', 'NaN',
'n/a', 'nan', 'null'
}
safe_na_values = default_na # 'N/A' intentionally not included

# read the config file
df = pd.read_csv(configdir+config_filename, sep=',', engine='python', comment='#', quotechar='"')
df = pd.read_csv(configdir+config_filename, sep=',', engine='python', comment='#', quotechar='"', na_values=safe_na_values, keep_default_na=False)
C = df.where(pd.notnull(df), None)

Plot_Filename_Last = None
Expand Down Expand Up @@ -103,12 +111,17 @@ def dataplot(config_filename,**kwargs):
# read data from exp file
# set header to the row where column names are stored (Python is 0 based)
E = pd.read_csv(expdir+pp.d1_Filename, header=int(pp.d1_Col_Name_Row-1), sep=',', engine='python', comment='#', quotechar='"')
E.columns = E.columns.str.strip() # <-- Strip whitespace from headers

x = E[pp.d1_Ind_Col_Name].values[:].astype(float)
# y = E[pp.d1_Dep_Col_Name].values[:].astype(float)
col_names = [c.strip() for c in pp.d1_Dep_Col_Name.split('|')]
# print(col_names)
y = E[col_names].values.astype(float)
# y = E[col_names].values.astype(float)
y = np.column_stack([
E[cols].astype(float).sum(axis=1) if '+' in name else E[[name]].astype(float).values.ravel()
for name in col_names
for cols in [name.split('+')]
])

styles = [c.strip() for c in pp.d1_Style.split('|')]
key_labels = [c.strip() for c in pp.d1_Key.split('|')]
Expand Down Expand Up @@ -147,6 +160,7 @@ def dataplot(config_filename,**kwargs):
# read data from exp file
# set header to the row where column names are stored (Python is 0 based)
E = pd.read_csv(expdir+pp.d1_Filename, header=int(pp.d1_Col_Name_Row-1), sep=',', engine='python', comment='#', quotechar='"')
E.columns = E.columns.str.strip() # <-- Strip whitespace from headers
x = E[pp.d1_Ind_Col_Name].values[:].astype(float)
y = E[pp.d1_Dep_Col_Name].values[:].astype(float)

Expand All @@ -164,10 +178,16 @@ def dataplot(config_filename,**kwargs):

# get the model results
M = pd.read_csv(cmpdir+pp.d2_Filename, header=int(pp.d2_Col_Name_Row-1), sep=',', engine='python', comment='#', quotechar='"')
M.columns = M.columns.str.strip() # <-- Strip whitespace from headers
x = M[pp.d2_Ind_Col_Name].values[:].astype(float)
# y = M[pp.d2_Dep_Col_Name].values[:].astype(float)
col_names = [c.strip() for c in pp.d2_Dep_Col_Name.split('|')]
y = M[col_names].values.astype(float)
# y = M[col_names].values.astype(float)
y = np.column_stack([
M[cols].astype(float).sum(axis=1) if '+' in name else M[[name]].astype(float).values.ravel()
for name in col_names
for cols in [name.split('+')]
])

version_string = revision
if (pp.VerStr_Filename):
Expand Down