v0.3.2: Fix plotting for complex homozygous alleles (#8)

Fixed plotting for complex homozygous alleles

v0.3.1

Fixed lowercase characters found in reference fasta or in config

v0.3.0: Merge pull request #4 from fmfi-compbio/refactoring

• added script for simulating previous steps of pipeline
• simplified conda reqs
• added pipenv

v0.2.0: Merge pull request #3 from fmfi-compbio/test_case

• Based on issue #2
• Test data with 10 reads for one locus were added. Input test data are stored in test/test_input and config file is test/config.yaml. Sadly, the test case is not completely independent, as it is required to provide a path to the reference genome and path to Guppy basecaller.
• Added wrapper bash run_test_case.sh for test_case. Run the wrapper script when in WarpSTR directory (and with activated conda environment), which will prompt you to provide the required paths and run the WarpSTR for you. Output files will be then stored in test/test_output/ as given in the config file.

v0.1.0

WarpSTR tool as corresponding to the initial preprint version on biorxiv.