Releases: fmfi-compbio/warpstr
Releases · fmfi-compbio/warpstr
v0.3.2: Fix plotting for complex homozygous alleles (#8)
v0.3.1
v0.3.0: Merge pull request #4 from fmfi-compbio/refactoring
- added script for simulating previous steps of pipeline
- simplified conda reqs
- added pipenv
v0.2.0: Merge pull request #3 from fmfi-compbio/test_case
- Based on issue #2
- Test data with 10 reads for one locus were added. Input test data are stored in
test/test_input
and config file istest/config.yaml
. Sadly, the test case is not completely independent, as it is required to provide a path to the reference genome and path to Guppy basecaller. - Added wrapper
bash run_test_case.sh
for test_case. Run the wrapper script when in WarpSTR directory (and with activated conda environment), which will prompt you to provide the required paths and run the WarpSTR for you. Output files will be then stored intest/test_output/
as given in the config file.