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foertsch/README.md

👋 Hi there! I'm Arion

🚀 About Me

I'm a Computational Biologist working analyzing (bulk and single-cell) Genomics and Transcriptomics data and integrating these modalities to uncover the regulatory mechanisms underlying cell fate decisions.

💻 Computational Tools

  • Languages: R, Bash, Python
  • Frameworks: Bioconductor (for R), Pandas/NumPy/SciPy (for Python)
  • Genomics Tools: Signac, SAMtools, BEDTools
  • Transcriptomics Tools: Seurat, DESeq2, edgeR, clusterProfiler
  • Integration & Workflows: Heavy User of SnakePipes and deepTools
  • Visualization: ggplot2, Plotly

🌱 I'm currently learning

  • Advanced techniques for integrating Genomics and Transcriptomics data (Harmony or AnnData)
  • Machine learning applications in multi-modal data analysis

📊 GitHub Stats

My GitHub stats

Top Langs

🏆 GitHub Trophies

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🎯 Goals for 2026

  • Deepening my expertise in the analysis of single cell RNA-Seq and spatial Transcriptomics datasets

Thanks for stopping by! Feel free to check out my repositories and don't hesitate to reach out for collaborations or just a chat!

Pinned Loading

  1. disk-hygiene disk-hygiene Public

    Disk hygiene tool for macOS and Linux servers

    Shell

  2. MSLc_Gene_Priming_public MSLc_Gene_Priming_public Public

    Jupyter Notebook

  3. pretty-missing pretty-missing Public

    Pretty missing-data matrix for RNA-Seq, inspired by missingno

    Python

  4. jokergoo/ComplexHeatmap jokergoo/ComplexHeatmap Public

    Make Complex Heatmaps

    R 1.5k 244