Add BGZF streaming I/O support#10
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Add BgzfOutputStream and BgzfInputStream for streaming BGZF (Blocked GNU Zip Format) compression and decompression using libdeflate. BGZF is the de facto standard compression format for high-throughput sequencing data (BAM, VCF, etc.). Each block is an independent gzip member at most 64KB, which fits libdeflate's whole-buffer model. New classes in com.fulcrumgenomics.jlibdeflate.stream: - Bgzf: constants, virtual offset utilities, format detection, and stream factory (newGzipInputStream with closure-based fallback) - BgzfOutputStream: synchronous writer with bgzfPosition() tracking - BgzfInputStream: synchronous reader with bgzfPosition() tracking Also refactors LibdeflateBenchmark to use shared Bgzf constants and adds a BGZF Streaming I/O section to the README.
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Add BgzfOutputStream and BgzfInputStream for streaming BGZF (Blocked GNU Zip Format) compression and decompression using libdeflate.
BGZF is the de facto standard compression format for high-throughput sequencing data (BAM, VCF, etc.). Each block is an independent gzip member at most 64KB, which fits libdeflate's whole-buffer model.
New classes in com.fulcrumgenomics.jlibdeflate.stream:
Also refactors LibdeflateBenchmark to use shared Bgzf constants and adds a BGZF Streaming I/O section to the README.