p-SEIQR

Particle dynamics for studying the SEIQR model

Scripts and programs that use particle collisions simulations to study extensions of the S(E)IR model.

Components

• dynamo/: Python scripts for preparing input files for, and reformatting output files from, the DynamO particle simulator.

• c-SIR/: C-code for running the SIR model (or extensions of it) over a collisions list file, as produced by DynamO and reformatted by dynamo/convert.py.

• run/: Python scripts that run c-SIR.

• analysis/: Python scripts for post-processing and visualizing the output from c-SIR.