1.0.1

VA-Spec 1.0.1 Patch Release

What's Changed

• feat: make ConditionSet nest-able to represent complex relationships by @korikuzma in #365
• feat: make InformationEntity.contributions ordered by @korikuzma in #364
• fix: resolve typos by @korikuzma in #360

Full Changelog: 1.0.0...1.0.1

1.0.0

VA-Spec 1.0.0 Official Release

The GA4GH Variant Annotation Specification (VA-SPEC) 1.0.0 is now released! This milestone establishes a robust standard for representing variant annotation data in genomic research and clinical applications.

Major Changes Over Ballot Cycle

• Finalized Variant Annotation Model: Comprehensive schema for representing variant annotation, including support for study results, source datasets, and profile metadata.
• Documentation and ReadMe Updates: Documentation has been thoroughly updated for v1, including class/attribute descriptions and improved onboarding information.
• Schema and Metadata Enhancements:
  • Type of the pmid field changed from integer to string for broader compatibility.
  • All profile-source.yaml files merged into a single unified source.
  • Refined metadata for improved clarity and consistency.
• Release Preparation and Housekeeping:
  • Merged all ballot updates for the 2025-03 cycle.
  • Streamlined documentation build process and fixed ReadTheDocs branch handling.

Getting Started

For comprehensive documentation and schema details, please visit the ReadTheDocs site.

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Thanks to all contributors for their hard work on this foundational release!

1.0.0-ballot.2025-03.5

What's Changed

• fix broken dynamic links by @larrybabb in #332
• testing rtd by @larrybabb in #333
• resolve issue #330 by @larrybabb in #335
• Added guidance for populating alleleOriginQualifier by @mbrush in #339
• Update proposition predicates with constant values by @mbrush in #338
• 1.0 docs ballot v4 by @mbrush in #341
• 1.0 docs ballot v5 by @mbrush in #344
• update schema and associated doc link ids to match new pre-release ve… by @larrybabb in #345

Full Changelog: 1.0.0-ballot.2025-03.4...1.0.0-ballot.2025-03.5

1.0.0-ballot.2025-03.4

What's Changed

• 1.0 doc ballot v3 updates by @larrybabb in #315
• Issue 317 by @larrybabb in #321
• Issue-260 transformed descriptive conditional to formal json schema by @larrybabb in #322
• Schema 'description' and 'comment' updates by @mbrush in #323
• feat!: revert caf.focusAllele change + add TumorVariantFrequencyStudy… by @korikuzma in #320
• chore: update va-spec tags to 1.0.0-ballot.2025-03.4 by @korikuzma in #325
• 1.0 docs ballot v3 by @larrybabb in #327

Full Changelog: 1.0.0-ballot.2025-03.3...1.0.0-ballot.2025-03.4

1.0.0-ballot.2025-03.3

What's Changed

• fix: membershipOperator and conditions/therapies should be required by @korikuzma in #309
• fix: resolve typos by @korikuzma in #310
• docs: add more info on VA-Spec Python by @korikuzma in #311
• chore: bump va-spec ballot version by @korikuzma in #312
• Docs update v2 by @larrybabb in #314

Full Changelog: 1.0.0-ballot.2025-03.2...1.0.0-ballot.2025-03.3

1.0.0-ballot.2025-03.2

What's Changed

• Add AAC constraints to therapeutic-response-study-statement-profile-s… by @mbrush in #304

Full Changelog: 1.0.0-ballot.2025-03.1...1.0.0-ballot.2025-03.2

1.0.0-ballot.2025-03.1

Product Documentation | Schemas | Discussions

Dates to Remember!

• The ballot review period will begin on Tuesday, March 4, 2025 and close on Friday, April 11, 2025.

1.0.0-snapshot.2025-02.2

What's Changed

• Update snapshot branch by @larrybabb in #295
• Docs merge to snapshot by @larrybabb in #297

Full Changelog: 1.0.0-snapshot.2025-02.1...1.0.0-snapshot.2025-02.2

1.0.0-snapshot.2025-02.1

What's Changed

• docs: fix some typos/grammatical errors by @jsstevenson in #237
• Documentation updates to support late shift to using Propositions in Statements by @mbrush in #235
• updated domain-entities to complete links needed for remaining TU links. by @larrybabb in #239
• chore: pull in 1.0.0 ballot.2024-11 changes by @korikuzma in #271
• feat!: update submodules to point to 2025-02 snapshots by @korikuzma in #272
• fix: add oneOf to StudyResult by @korikuzma in #273
• Bump jinja2 from 3.1.4 to 3.1.5 in /docs/source by @dependabot in #242
• Fix 1.0.0 snapshot.2025 02.1 references by @korikuzma in #274
• fix: use 1.0.0-snapshot.2025-02.1 instead of 1.x references by @korikuzma in #275

New Contributors

• @jsstevenson made their first contribution in #237

Full Changelog: 1.0.0-ballot.2024-11.2...1.0.0-snapshot.2025-02.1

Addendum to 1.0.0 Trial Use Review Ballot (November 2024)

This is an addendum to 1.0.0 Trial Use Review Ballot (November 2024). The following additional classes have been reviewed, revised, and advanced for Trial Use consideration:

Domain-agnostic data classes

• Agent
• Contribution

Please contribute to the discussion in #234.

Full Changelog: 1.0.0-ballot.2024-11.1...1.0.0-ballot.2024-11.2