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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 144 48

  2. OUTRIDER OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 52 11

  3. FRASER FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 46 22

  4. absplice absplice Public

    Python 38 4

  5. scooby scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 23 3

Repositories

Showing 10 of 55 repositories
  • FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    gagneurlab/FRASER’s past year of commit activity
    R 46 22 26 0 Updated May 20, 2025
  • OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    gagneurlab/OUTRIDER’s past year of commit activity
    R 52 11 14 1 Updated May 20, 2025
  • drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    gagneurlab/drop’s past year of commit activity
    Python 144 MIT 48 37 5 Updated May 16, 2025
  • mass-based-dnps Public
    gagneurlab/mass-based-dnps’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated May 16, 2025
  • PROTRIDER Public
    gagneurlab/PROTRIDER’s past year of commit activity
    Python 3 1 0 0 Updated May 6, 2025
  • AbExp Public
    gagneurlab/AbExp’s past year of commit activity
    Python 7 MIT 1 0 0 Updated Apr 11, 2025
  • funcRVP Public

    Bayesian genotype to phenotype model leveraging gene embeddings

    gagneurlab/funcRVP’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Apr 7, 2025
  • scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    gagneurlab/scooby’s past year of commit activity
    Python 23 MIT 3 0 2 Updated Mar 31, 2025
  • scooby_reproducibility Public
    gagneurlab/scooby_reproducibility’s past year of commit activity
    Jupyter Notebook 4 MIT 1 0 0 Updated Mar 18, 2025
  • dependencies_DNALM Public

    Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements

    gagneurlab/dependencies_DNALM’s past year of commit activity
    Jupyter Notebook 12 MIT 1 3 0 Updated Mar 13, 2025
View all repositories

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