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1 | | -<tool id="genomescope" name="GenomeScope" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.01"> |
| 1 | +<tool id="genomescope" name="GenomeScope" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
2 | 2 | <description>reference-free genome profiling</description> |
3 | 3 | <macros> |
4 | | - <token name="@TOOL_VERSION@">2.0.1</token> |
| 4 | + <token name="@TOOL_VERSION@">2.1.0</token> |
5 | 5 | <token name="@VERSION_SUFFIX@">0</token> |
| 6 | + <token name="@PROFILE@">21.01</token> |
6 | 7 | </macros> |
7 | 8 | <requirements> |
8 | 9 | <requirement type="package" version="@TOOL_VERSION@">genomescope2</requirement> |
|
128 | 129 | <has_size value="210889" delta="6000"/> |
129 | 130 | </assert_contents> |
130 | 131 | </output> |
131 | | - <output name="model" file="genomescope-out1-1.txt" ftype="txt" lines_diff="2"/> |
132 | | - <output name="summary" file="genomescope-out1-2.txt" ftype="txt" lines_diff="2"/> |
133 | | - <output name="progress" file="genomescope-out1-3.txt" ftype="txt" lines_diff="2"/> |
134 | | - <output name="model_params" file="genomescope-out1-1.tab" ftype="tabular"/> |
| 132 | + <output name="model" ftype="txt"> |
| 133 | + <assert_contents> |
| 134 | + <has_n_lines n="19"/> |
| 135 | + </assert_contents> |
| 136 | + </output> |
| 137 | + <output name="summary" ftype="txt"> |
| 138 | + <assert_contents> |
| 139 | + <has_n_lines n="15"/> |
| 140 | + </assert_contents> |
| 141 | + </output> |
| 142 | + <output name="progress" ftype="txt"> |
| 143 | + <assert_contents> |
| 144 | + <has_n_lines n="6"/> |
| 145 | + </assert_contents> |
| 146 | + </output> |
| 147 | + <output name="model_params" ftype="tabular"> |
| 148 | + <assert_contents> |
| 149 | + <has_n_lines n="1"/> |
| 150 | + </assert_contents> |
| 151 | + </output> |
135 | 152 | </test> |
136 | 153 | <!--Test initial_repetitiveness option--> |
137 | 154 | <test expect_num_outputs="5"> |
|
167 | 184 | <assert_contents> |
168 | 185 | <has_line line="initial repetitiveness = 0.1"/> |
169 | 186 | <has_text text="Homozygous (aa) 98.9538% 98.967%"/> |
| 187 | + <has_n_lines n="15"/> |
170 | 188 | </assert_contents> |
171 | 189 | </output> |
172 | 190 | </test> |
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204 | 222 | <output name="summary" ftype="txt" lines_diff="2"> |
205 | 223 | <assert_contents> |
206 | 224 | <has_line line="initial heterozygosities = 0.04,0.01"/> |
207 | | - <has_text text="Homozygous (aaa) 7.70599% 100%"/> |
| 225 | + <has_text text="Homozygous (aaa) 5.92481% 100%"/> |
| 226 | + <has_n_lines n="17"/> |
208 | 227 | </assert_contents> |
209 | 228 | </output> |
210 | 229 | </test> |
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