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SaimMomin12planemo-autoupdate
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Update tools/genomescope to 2.1.0 (#7478)
* Updating tools/genomescope from version 2.0.1 to 2.1.0 * Bump Genomescope to 2.1.0 * Readjust test parameters --------- Co-authored-by: planemo-autoupdate <planemo-autoupdate@users.noreply.github.com>
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tools/genomescope/genomescope.xml

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<tool id="genomescope" name="GenomeScope" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.01">
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<tool id="genomescope" name="GenomeScope" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
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<description>reference-free genome profiling</description>
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<macros>
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<token name="@TOOL_VERSION@">2.0.1</token>
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<token name="@TOOL_VERSION@">2.1.0</token>
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<token name="@VERSION_SUFFIX@">0</token>
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<token name="@PROFILE@">21.01</token>
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</macros>
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<requirements>
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<requirement type="package" version="@TOOL_VERSION@">genomescope2</requirement>
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<has_size value="210889" delta="6000"/>
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</assert_contents>
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</output>
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<output name="model" file="genomescope-out1-1.txt" ftype="txt" lines_diff="2"/>
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<output name="summary" file="genomescope-out1-2.txt" ftype="txt" lines_diff="2"/>
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<output name="progress" file="genomescope-out1-3.txt" ftype="txt" lines_diff="2"/>
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<output name="model_params" file="genomescope-out1-1.tab" ftype="tabular"/>
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<output name="model" ftype="txt">
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<assert_contents>
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<has_n_lines n="19"/>
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</assert_contents>
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</output>
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<output name="summary" ftype="txt">
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<assert_contents>
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<has_n_lines n="15"/>
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</assert_contents>
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</output>
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<output name="progress" ftype="txt">
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<assert_contents>
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<has_n_lines n="6"/>
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</assert_contents>
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</output>
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<output name="model_params" ftype="tabular">
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<assert_contents>
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<has_n_lines n="1"/>
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</assert_contents>
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</output>
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</test>
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<!--Test initial_repetitiveness option-->
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<test expect_num_outputs="5">
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<assert_contents>
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<has_line line="initial repetitiveness = 0.1"/>
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<has_text text="Homozygous (aa) 98.9538% 98.967%"/>
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<has_n_lines n="15"/>
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</assert_contents>
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</output>
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</test>
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<output name="summary" ftype="txt" lines_diff="2">
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<assert_contents>
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<has_line line="initial heterozygosities = 0.04,0.01"/>
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<has_text text="Homozygous (aaa) 7.70599% 100%"/>
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<has_text text="Homozygous (aaa) 5.92481% 100%"/>
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<has_n_lines n="17"/>
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</assert_contents>
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</output>
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</test>

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