Add/changes some mem values

[SantaMcCloud]

I check some mem between .ORG, .FR and .EU for some tools which are used in a WF.

After comapre them i got ask to change some mem or add some tools/rules to the shared db.

I copy metaSPAdes and Semibin from .EU : https://github.com/usegalaxy-eu/infrastructure-playbook/blob/59ae3e284aa1ea32ebb1d9f25f0119f5b3821879/files/galaxy/tpv/tools.yml

Binette, CheckM2 and CheckM lineage_wf where copied from .FR: https://gitlab.com/ifb-elixirfr/usegalaxy-fr/infrastructure/-/blob/preprod/production/files/total_perspective_vortex/tools.yml?ref_type=heads

[SantaMcCloud]

hm strange error

[SantaMcCloud]

Add a tool which failed in .ORG for a GTA. The job had the ID: bbd44e69cb8906b5db17c96263a18ec0

This are the metrics:

[SantaMcCloud]

Another tool which need more memory in .ORG. ID: bbd44e69cb8906b58921b72541fe2018
Also failed in .AU. ID: a6e389a98c2d16785e9a4afe167c45ed
Both are for GTA

Metrics .ORG:

Metrics .AU:

[cat-bro]

These rules could be given ids, e.g.:

- id: metaspades_medium_input_rule
  if: 0.05 <= input_size < 1

That makes it easier to understand where a rule has come from downstream, and also to override a rule on a downstream galaxy

[nuwang]

Can we also prefix the rule id with tpvdb_?

[SantaMcCloud]

should be fine like this? 4026dbb

[cat-bro]

This does not look like it matches a tool ID. The shared db already has an entry for toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/.*

[SantaMcCloud]

i had a typo there but yes you are right there was a rule strange i didnt found it at the beginning. 45309ff removed it here and change the entry to have at least 8 GB at the beginning instead of only 3.7

[nuwang]

@SantaMcCloud Thanks for this. Could you also please run tpv format to fix the linting error?

[SantaMcCloud]

@nuwang should be done!