Add new tutorial named "From reads to (pseudo) counts : guided step by step exploration" #4747
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
New tutorial named "From reads to (pseudo) counts : guided step by step exploration"
Add : - Images- - data-library.yalm - main_workflow.ga - index.md
hexylena
reviewed
Feb 21, 2024
Comment on lines
18
to
21
| available_on_these_galaxies: | ||
| known_working: | ||
| - UseGalaxy.fr | ||
| - UseGalaxy.fr |
There was a problem hiding this comment.
This is not a known metadata value, it will be flagged by our linter once I hit approve. Supported servers is calculated automatically by the GTN, no action needed on your part. :)
hexylena
reviewed
Feb 21, 2024
Comment on lines
+52
to
+60
| > ● Run accession id | ||
| > | ||
| > ● Sequencing technology | ||
| > | ||
| > ● Library preparation | ||
| > | ||
| > ● Single / Paired-end ? | ||
| > | ||
| > ● Number of reads |
There was a problem hiding this comment.
Suggested change
| > ● Run accession id | |
| > | |
| > ● Sequencing technology | |
| > | |
| > ● Library preparation | |
| > | |
| > ● Single / Paired-end ? | |
| > | |
| > ● Number of reads | |
| > - Run accession id | |
| > - Sequencing technology | |
| > - Library preparation | |
| > - Single / Paired-end ? | |
| > - Number of reads |
please use - for semantic lists, these will be read better by screenreaders
hexylena
reviewed
Feb 21, 2024
hexylena
reviewed
Feb 21, 2024
Comment on lines
+102
to
+108
| > <question-title>Question</question-title> | ||
| > 1. How many reads are in this dataset? | ||
| > 2. What sequencing length was used? | ||
| > 3. How would you qualify the sequencing quality of this run? | ||
| > 4. Are there any quality problems we should deal with? | ||
| > | ||
| > > <solution-title>Solution</solution-title> |
There was a problem hiding this comment.
Suggested change
| > <question-title>Question</question-title> | |
| > 1. How many reads are in this dataset? | |
| > 2. What sequencing length was used? | |
| > 3. How would you qualify the sequencing quality of this run? | |
| > 4. Are there any quality problems we should deal with? | |
| > | |
| > > <solution-title>Solution</solution-title> | |
| > <question-title></question-title> | |
| > 1. How many reads are in this dataset? | |
| > 2. What sequencing length was used? | |
| > 3. How would you qualify the sequencing quality of this run? | |
| > 4. Are there any quality problems we should deal with? | |
| > | |
| > > <solution-title></solution-title> |
the words 'question' and 'solution' inside aren't necessary, they will be included automatically by the template already.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
The adaptation of this tutorial on RNA-seq data analysis is already well advanced:
To-do-list: