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121 changes: 121 additions & 0 deletions ...808777ed19e56dc0cf2347e8ab7453c023ba3.txt → ...3e216408f173fe4213aca325aee8d7da7d2b3.txt
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GTN_GTN:1784897321

topics/imaging/images/Annotation_AI_Pipeline/Check_data.png
topics/imaging/images/Annotation_AI_Pipeline/Visualize_output_Coco_Visualizer.gif
topics/imaging/images/Annotation_AI_Pipeline/Visualize_output_SAM3-ezgif.com-video-to-gif-converter.gif
topics/imaging/tutorials/Annotation_AI_Pipeline/data-library.yaml
topics/imaging/tutorials/Annotation_AI_Pipeline/faqs/index.md
topics/imaging/tutorials/Annotation_AI_Pipeline/tutorial.bib
topics/imaging/tutorials/Annotation_AI_Pipeline/tutorial.md
topics/imaging/tutorials/Annotation_AI_Pipeline/tutorial_FR.md
GTN_GTN:1784885255

topics/ecology/tutorials/ENA_Biodiv_submission/tutorial.md
GTN_GTN:1784883596

CONTRIBUTORS.yaml
topics/statistics/tutorials/GTEx_Tissue_modeling/data-library.yaml
topics/statistics/tutorials/GTEx_Tissue_modeling/faqs/index.md
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/accuracy_epochs.png
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/dataset_overview.png
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/gradcam.png
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/model_performance_summary.png
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/open_report.png
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/overffiting_gap.png
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/rocauc_epochs.png
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/test_confusion_matrix.png
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/test_metrics.png
topics/statistics/tutorials/GTEx_Tissue_modeling/figures/training_config.png
topics/statistics/tutorials/GTEx_Tissue_modeling/slides.html
topics/statistics/tutorials/GTEx_Tissue_modeling/tutorial.bib
topics/statistics/tutorials/GTEx_Tissue_modeling/tutorial.md
topics/statistics/tutorials/GTEx_Tissue_modeling/workflows/index.md
topics/statistics/tutorials/GTEx_Tissue_modeling/workflows/main_workflow-tests.yml
topics/statistics/tutorials/GTEx_Tissue_modeling/workflows/main_workflow.ga
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topics/assembly/tutorials/hybrid_denovo_assembly/tutorial.md
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package-lock.json
yarn.lock
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topics/transcriptomics/tutorials/rna-seq-reads-to-counts/tutorial.md
GTN_GTN:1784855603

metadata/git-mod-dd6808777ed19e56dc0cf2347e8ab7453c023ba3.txt
metadata/git-pub-dd6808777ed19e56dc0cf2347e8ab7453c023ba3.txt
metadata/github.yml
GTN_GTN:1784855575

.github/workflows/ci-main.yml
.github/workflows/ci.yml
.github/workflows/deploy.yml
.github/workflows/git-gat.yml
.github/workflows/monthly-release-backfill.yml
.github/workflows/monthly-release.yml
.github/workflows/social.yml
.github/workflows/video-dry.yml
.github/workflows/video.yml
.github/workflows/workflowhub.yml
GTN_GTN:1784855535

topics/introduction/tutorials/galaxy-cite/tutorial.md
GTN_GTN:1784796913

topics/computational-chemistry/tutorials/cheminformatics/tutorial.md
topics/galaxy-interface/tutorials/history-to-workflow/tutorial.md
topics/galaxy-interface/tutorials/history/tutorial.md
topics/introduction/tutorials/data-manipulation-olympics/tutorial.md
topics/introduction/tutorials/galaxy-intro-101/tutorial.md
topics/introduction/tutorials/galaxy-intro-rdm/tutorial.md
topics/introduction/tutorials/galaxy-reproduce/tutorial.md
topics/metabolomics/tutorials/gc_ms_with_xcms/tutorial.md
topics/metabolomics/tutorials/gcms/tutorial.md
topics/metabolomics/tutorials/lcms-dataprocessing/tutorial.md
topics/metabolomics/tutorials/lcms-preprocessing/tutorial.md
topics/metabolomics/tutorials/lcms/tutorial.md
topics/metabolomics/tutorials/mfassignr/tutorial.md
topics/metabolomics/tutorials/msi-analyte-distribution/tutorial.md
topics/metabolomics/tutorials/msi-finding-nglycans/tutorial.md
topics/metabolomics/tutorials/qcxms-predictions/tutorial.md
topics/proteomics/tutorials/mass-spectrometry-imaging-loading-exploring-data/tutorial.md
GTN_GTN:1784722881

CONTRIBUTORS.yaml
_plugins/util.rb
topics/digital-humanities/tutorials/mfa_tutorial/.gitignore
topics/digital-humanities/tutorials/mfa_tutorial/data-library.yaml
topics/digital-humanities/tutorials/mfa_tutorial/display
topics/digital-humanities/tutorials/mfa_tutorial/display (2)/alignment_analysis.csv
topics/digital-humanities/tutorials/mfa_tutorial/display (2)/the_fox_and_the_grapes.TextGrid
topics/digital-humanities/tutorials/mfa_tutorial/faqs/index.md
topics/digital-humanities/tutorials/mfa_tutorial/tutorial.bib
topics/digital-humanities/tutorials/mfa_tutorial/tutorial.md
topics/digital-humanities/tutorials/mfa_tutorial/workflows/MFA-tutorial-tests.yml
topics/digital-humanities/tutorials/mfa_tutorial/workflows/MFA-tutorial.ga
topics/digital-humanities/tutorials/mfa_tutorial/workflows/index.md
topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/Aligned TextGrid.mfa_textgrids.zip
topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/Archive containing unknown words.mfa_oov.zip
topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/List of unknown words.txt
topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/Updated dictionary including OOVs.mfa.dict
topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/dictionary of generated pronunciations for OOVs.mfa.dict
topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/the_fox_and_the_grapes.zip.mfa_corpus_model.zip
GTN_GTN:1784637753

topics/genome-annotation/tutorials/pangenome-annotation-with-roary/images/pangenome_comparison.png
topics/genome-annotation/tutorials/pangenome-annotation-with-roary/images/phylo_tree.png
topics/genome-annotation/tutorials/pangenome-annotation-with-roary/images/presence_absence_variation_pangenome.png
topics/genome-annotation/tutorials/pangenome-annotation-with-roary/tutorial.bib
topics/genome-annotation/tutorials/pangenome-annotation-with-roary/tutorial.md
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metadata/shortlinks.yaml
GTN_GTN:1784593268

.github/workflows/deploy.yml
.github/workflows/monthly-release-backfill.yml
.github/workflows/monthly-release.yml
.github/workflows/video-dry.yml
.github/workflows/video.yml
GTN_GTN:1784147952

CONTRIBUTORS.yaml
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A topics/imaging/images/Annotation_AI_Pipeline/Check_data.png
A topics/imaging/images/Annotation_AI_Pipeline/Visualize_output_Coco_Visualizer.gif
A topics/imaging/images/Annotation_AI_Pipeline/Visualize_output_SAM3-ezgif.com-video-to-gif-converter.gif
A topics/imaging/tutorials/Annotation_AI_Pipeline/data-library.yaml
A topics/imaging/tutorials/Annotation_AI_Pipeline/faqs/index.md
A topics/imaging/tutorials/Annotation_AI_Pipeline/tutorial.bib
A topics/imaging/tutorials/Annotation_AI_Pipeline/tutorial.md
A topics/imaging/tutorials/Annotation_AI_Pipeline/tutorial_FR.md
GTN_GTN:1784883596

A topics/statistics/tutorials/GTEx_Tissue_modeling/data-library.yaml
A topics/statistics/tutorials/GTEx_Tissue_modeling/faqs/index.md
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/accuracy_epochs.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/dataset_overview.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/gradcam.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/model_performance_summary.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/open_report.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/overffiting_gap.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/rocauc_epochs.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/test_confusion_matrix.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/test_metrics.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/figures/training_config.png
A topics/statistics/tutorials/GTEx_Tissue_modeling/slides.html
A topics/statistics/tutorials/GTEx_Tissue_modeling/tutorial.bib
A topics/statistics/tutorials/GTEx_Tissue_modeling/tutorial.md
A topics/statistics/tutorials/GTEx_Tissue_modeling/workflows/index.md
A topics/statistics/tutorials/GTEx_Tissue_modeling/workflows/main_workflow-tests.yml
A topics/statistics/tutorials/GTEx_Tissue_modeling/workflows/main_workflow.ga
GTN_GTN:1784855603

R099 metadata/git-mod-c35f73dc301d86cb6736387363a80827b8f9ca1c.txt metadata/git-mod-dd6808777ed19e56dc0cf2347e8ab7453c023ba3.txt
R099 metadata/git-pub-c35f73dc301d86cb6736387363a80827b8f9ca1c.txt metadata/git-pub-dd6808777ed19e56dc0cf2347e8ab7453c023ba3.txt
GTN_GTN:1784722881

A topics/digital-humanities/tutorials/mfa_tutorial/.gitignore
A topics/digital-humanities/tutorials/mfa_tutorial/data-library.yaml
A topics/digital-humanities/tutorials/mfa_tutorial/display
A topics/digital-humanities/tutorials/mfa_tutorial/display (2)/alignment_analysis.csv
A topics/digital-humanities/tutorials/mfa_tutorial/display (2)/the_fox_and_the_grapes.TextGrid
A topics/digital-humanities/tutorials/mfa_tutorial/faqs/index.md
A topics/digital-humanities/tutorials/mfa_tutorial/tutorial.bib
A topics/digital-humanities/tutorials/mfa_tutorial/tutorial.md
A topics/digital-humanities/tutorials/mfa_tutorial/workflows/MFA-tutorial-tests.yml
A topics/digital-humanities/tutorials/mfa_tutorial/workflows/MFA-tutorial.ga
A topics/digital-humanities/tutorials/mfa_tutorial/workflows/index.md
A topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/Aligned TextGrid.mfa_textgrids.zip
A topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/Archive containing unknown words.mfa_oov.zip
A topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/List of unknown words.txt
A topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/Updated dictionary including OOVs.mfa.dict
A topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/dictionary of generated pronunciations for OOVs.mfa.dict
A topics/digital-humanities/tutorials/mfa_tutorial/workflows/test-data/the_fox_and_the_grapes.zip.mfa_corpus_model.zip
GTN_GTN:1784637753

A topics/genome-annotation/tutorials/pangenome-annotation-with-roary/images/pangenome_comparison.png
A topics/genome-annotation/tutorials/pangenome-annotation-with-roary/images/phylo_tree.png
A topics/genome-annotation/tutorials/pangenome-annotation-with-roary/images/presence_absence_variation_pangenome.png
A topics/genome-annotation/tutorials/pangenome-annotation-with-roary/tutorial.bib
A topics/genome-annotation/tutorials/pangenome-annotation-with-roary/tutorial.md
GTN_GTN:1784029256

A topics/galaxy-interface/tutorials/iiif/bodleian.png
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