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5 changes: 2 additions & 3 deletions README.rst
Original file line number Diff line number Diff line change
Expand Up @@ -13,10 +13,9 @@ Paper
If you use these tutorials for your work, consider citing the corresponding paper:

Dupré la Tour, T., Visconti di Oleggio Castello, M., & Gallant, J. L. (2025).
The Voxelwise Encoding Model framework: a tutorial introduction to fitting encoding models to fMRI data.
https://doi.org/10.31234/osf.io/t975e
The Voxelwise Encoding Model framework: A tutorial introduction to fitting encoding models to fMRI data.
*Imaging Neuroscience*. https://doi.org/10.1162/imag_a_00575

You can find a copy of the paper `here <https://doi.org/10.31234/osf.io/t975e>`_.

Tutorials
=========
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15 changes: 8 additions & 7 deletions tutorials/pages/index.md
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Expand Up @@ -5,9 +5,9 @@ Welcome to the tutorials on the Voxelwise Encoding Model framework from the

If you use these tutorials for your work, consider citing the corresponding paper:

> T. Dupré la Tour, M. Visconti di Oleggio Castello, and J. L. Gallant. The Voxelwise Encoding Model framework: a tutorial introduction to fitting encoding models to fMRI data. PsyArXiv, 2025. [doi:10.31234/osf.io/t975e.](https://doi.org/10.31234/osf.io/t975e)

You can find a copy of the paper [here](https://doi.org/10.31234/osf.io/t975e).
> Dupré la Tour, T., Visconti di Oleggio Castello, M., & Gallant, J. L. (2025).
> The Voxelwise Encoding Model framework: A tutorial introduction to fitting encoding models to fMRI data.
> *Imaging Neuroscience*. [https://doi.org/10.1162/imag_a_00575](https://doi.org/10.1162/imag_a_00575)

## How to use the tutorials

Expand All @@ -18,8 +18,7 @@ To explore the VEM tutorials, one can:
[all notebooks](https://colab.research.google.com/github/gallantlab/voxelwise_tutorials/blob/main/tutorials/notebooks/shortclips/vem_tutorials_merged_for_colab.ipynb) or [only the notebooks about model fitting](https://colab.research.google.com/github/gallantlab/voxelwise_tutorials/blob/main/tutorials/notebooks/shortclips/vem_tutorials_merged_for_colab_model_fitting.ipynb)
3. Use the provided [Dockerfiles](https://github.com/gallantlab/voxelwise_tutorials/tree/main/docker) to run the notebooks locally (recommended for Windows users, as some of the packages used do not support Windows)

The code of this project is available on GitHub at [gallantlab/voxelwise_tutorials
](https://github.com/gallantlab/voxelwise_tutorials).
The code of this project is available on GitHub at [gallantlab/voxelwise_tutorials](https://github.com/gallantlab/voxelwise_tutorials).

The GitHub repository also contains a Python package called
`voxelwise_tutorials`, which contains useful functions to download the data
Expand All @@ -29,14 +28,16 @@ instructions are available [here](voxelwise_package.rst)
## Cite as

Please cite the corresponding publications if you use the code or data in your work:
- `voxelwise_tutorials` {cite}`dupre2023`

- `voxelwise_tutorials` {cite}`dupre2025`
- `himalaya` {cite}`dupre2022`
- `pycortex` {cite}`gao2015`
- `pymoten` {cite}`nunez2021software`
- `shortclips` dataset {cite}`huth2022data`
- `vim-2` dataset {cite}`nishimoto2014data`

## References

```{bibliography}
:filter: docname in docnames
```
```
3 changes: 2 additions & 1 deletion tutorials/pages/references.md
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Expand Up @@ -11,12 +11,13 @@ publications {cite}`kay2008,naselaris2009,nishimoto2011,huth2012,cukur2013,cukur

## Packages

- `voxelwise_tutorials` {cite}`dupre2023`
- `voxelwise_tutorials` {cite}`dupre2025`
- `himalaya` {cite}`dupre2022`
- `pycortex` {cite}`gao2015`
- `pymoten` {cite}`nunez2021software`

## Bibliography

```{bibliography}
:filter: docname in docnames
```
8 changes: 4 additions & 4 deletions tutorials/static/references.bib
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Expand Up @@ -163,12 +163,12 @@ @misc{huth2022data
doi = {10.12751/g-node.vy1zjd}
}

@article{dupre2023,
@article{dupre2025,
author = {Dupré la Tour, T. and Visconti di Oleggio Castello, M. and Gallant, J. L.},
title = {The Voxelwise Encoding Model framework: a tutorial introduction to fitting encoding models to {fMRI} data},
journal = {PsyArXiv},
title = {The {Voxelwise Encoding Model} framework: a tutorial introduction to fitting encoding models to {fMRI} data},
journal = {Imaging Neuroscience},
year = {2025},
doi = {10.31234/osf.io/t975e}
doi = {10.1162/imag_a_00575},
}

@article{gao2015,
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