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GenePattern

A Platform for Reproducible Bioinformatics

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  1. genepattern-notebook genepattern-notebook Public

    Platform for integrating genomic analysis with Jupyter Notebooks.

    Python 44 12

  2. genepattern-server genepattern-server Public

    The GenePattern Server web application

    HTML 36 17

  3. genepattern-python genepattern-python Public

    GenePattern Python Library

    Python 11 3

Repositories

Showing 10 of 247 repositories
  • Single.Cell.ssGSEA Public

    A version of Single Sample GSEA adapted to the sparsity of single cell RNA-seq data

    genepattern/Single.Cell.ssGSEA’s past year of commit activity
    Python 0 0 0 0 Updated Mar 12, 2025
  • tfsites.MapTfDNAInteractions Public

    Maps the crystal structure for a transcription factor

    genepattern/tfsites.MapTfDNAInteractions’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Mar 12, 2025
  • tfsites.common_docker Public

    Docker container for all the Farley lab tfsites suite of modules

    genepattern/tfsites.common_docker’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Mar 11, 2025
  • h5adtoGCT Public

    h5adtoGCT tool

    genepattern/h5adtoGCT’s past year of commit activity
    Python 0 0 0 0 Updated Mar 11, 2025
  • genepattern-website Public

    GenePattern website and associated scripts

    genepattern/genepattern-website’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 11, 2025
  • spatialGE.STdiff Public

    STDiff function

    genepattern/spatialGE.STdiff’s past year of commit activity
    R 0 0 0 0 Updated Mar 7, 2025
  • spatialGE.STclust Public

    SpatialGE STClust module.

    genepattern/spatialGE.STclust’s past year of commit activity
    R 0 0 0 0 Updated Mar 7, 2025
  • CorrelationMatrix Public

    Correlation Matrix module

    genepattern/CorrelationMatrix’s past year of commit activity
    Python 0 0 0 0 Updated Mar 6, 2025
  • genepattern-server Public

    The GenePattern Server web application

    genepattern/genepattern-server’s past year of commit activity
    HTML 36 17 0 4 Updated Mar 5, 2025
  • common_module_code Public

    This repository contains the shared code used by the GenePattern modules.

    genepattern/common_module_code’s past year of commit activity
    0 0 0 0 Updated Feb 27, 2025
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