leptin-mouse-rnaseq

Docker files and lesson materials for GEA RNA-Seq lesson (https://github.com/genomics-education-alliance/leptin-rna-seq-lesson). This container provides a Jupyter Lab interface and the software tools for doing the demonstration RNA-Seq analysis.

To run image locally

1. Get the docker container:

    $ docker pull genomicseducationalliance/rna-seq-leptin:dev_3.0
   

2. Clone the repository with notebooks

    $ git clone https://github.com/genomics-education-alliance/leptin-mouse-rnaseq.git
   

3. Example:

    $ docker run --name leptin -d -p 8888:8888 -v /some-absolute-path/:/home/gea_user/ genomicseducationalliance/rna-seq-leptin:dev_3.0
   

Try it!

Datasets, worked-examples, and notebooks available on CyVerse: /iplant/home/shared/gea/rna-seq-leptin

You can launch a Jupyter lab session pre-loaded with data and notebooks on CyVerse:

This material is based upon work supported by the National Science Foundation under Grant No. #1827130. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation."