Compile out progress bar for tests

src/imports/fasta.rs

@@ -14,8 +14,7 @@ use crate::models::{
     strand::Strand,
 };
 use crate::operation_management::{end_operation, start_operation, OperationError};
-use crate::progress_bar::{add_saving_operation_bar, get_progress_bar};
-use indicatif::MultiProgress;
+use crate::progress_bar::{add_saving_operation_bar, get_handler, get_progress_bar};
 use noodles::fasta;
 use rusqlite;
 use rusqlite::Connection;
@@ -37,7 +36,7 @@ pub fn import_fasta<'a>(
     conn: &Connection,
     operation_conn: &Connection,
 ) -> Result<Operation, FastaError> {
-    let progress_bar = MultiProgress::new();
+    let progress_bar = get_handler();
     let mut session = start_operation(conn);
 
     let mut reader = fasta::io::reader::Builder.build_from_path(fasta).unwrap();

src/imports/genbank.rs

@@ -11,9 +11,8 @@ use crate::models::sample::Sample;
 use crate::models::sequence::Sequence;
 use crate::models::strand::Strand;
 use crate::operation_management::{end_operation, start_operation};
-use crate::progress_bar::{add_saving_operation_bar, get_progress_bar};
+use crate::progress_bar::{add_saving_operation_bar, get_handler, get_progress_bar};
 use gb_io::reader;
-use indicatif::MultiProgress;
 use rusqlite::Connection;
 use std::io::Read;
 use std::str;
@@ -29,7 +28,7 @@ pub fn import_genbank<'a, R>(
 where
     R: Read,
 {
-    let progress_bar = MultiProgress::new();
+    let progress_bar = get_handler();
     let mut session = start_operation(conn);
     let reader = reader::SeqReader::new(data);
     let collection = Collection::create(conn, collection.into().unwrap_or_default());

src/imports/gfa.rs

@@ -15,8 +15,7 @@ use crate::models::{
     sequence::Sequence,
     strand::Strand,
 };
-use crate::progress_bar::{get_progress_bar, get_time_elapsed_bar};
-use indicatif::MultiProgress;
+use crate::progress_bar::{get_handler, get_progress_bar, get_time_elapsed_bar};
 
 fn bool_to_strand(direction: bool) -> Strand {
     if direction {
@@ -32,7 +31,7 @@ pub fn import_gfa<'a>(
     sample_name: impl Into<Option<&'a str>>,
     conn: &Connection,
 ) {
-    let progress_bar = MultiProgress::new();
+    let progress_bar = get_handler();
     Collection::create(conn, collection_name);
     let sample_name = sample_name.into();
     if let Some(sample_name) = sample_name {

src/progress_bar.rs

@@ -1,6 +1,16 @@
 use indicatif::{MultiProgress, ProgressBar, ProgressStyle};
 use std::time::Duration;
 
+pub fn get_handler() -> MultiProgress {
+    let p = MultiProgress::new();
+    #[cfg(test)]
+    {
+        use indicatif::ProgressDrawTarget;
+        p.set_draw_target(ProgressDrawTarget::hidden())
+    }
+    p
+}
+
 pub fn get_progress_bar(length: impl Into<Option<u64>>) -> ProgressBar {
     let length = length.into();
     let bar = if let Some(l) = length {

src/updates/vcf.rs

@@ -11,9 +11,8 @@ use crate::models::{
     traits::*,
 };
 use crate::operation_management::{end_operation, start_operation, OperationError};
-use crate::progress_bar::{add_saving_operation_bar, get_progress_bar};
+use crate::progress_bar::{add_saving_operation_bar, get_handler, get_progress_bar};
 use crate::{calculate_hash, parse_genotype};
-use indicatif::MultiProgress;
 use noodles::vcf;
 use noodles::vcf::variant::record::info::field::Value as InfoValue;
 use noodles::vcf::variant::record::samples::series::value::genotype::Phasing;
@@ -183,7 +182,7 @@ pub fn update_with_vcf<'a>(
     operation_conn: &Connection,
     coordinate_frame: impl Into<Option<&'a str>>,
 ) -> Result<Operation, VcfError> {
-    let progress_bar = MultiProgress::new();
+    let progress_bar = get_handler();
     let coordinate_frame = coordinate_frame.into();
 
     let mut session = start_operation(conn);