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  • Updated styling to use tailwind. Requires Style update (experimental) girder#3570.
  • New UI for updating the columns to show in the item list view. Created/copied views are scoped to the current user.

@manthey
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manthey commented Oct 28, 2024

@jeffbaumes Can you rebase or merge master into this branch? The girder/girder_large_image/web_client/templates/itemList.pug is probably the only complex merge.

manthey and others added 29 commits May 21, 2025 15:12
In many instances, save annotation element via a PATCH call
Reduce a warning message that should no longer be of interest
When zoomed in with a power of two of the max zoom and showing
annotations, make sure all of the annotation in view are fully loaded.
Before, this was still subject to detail limits, which meant that it was
possible to fail to resolve some annotations regardless of zoom level.
Show all annotations when zoomed in
Guard against nd2 NotImplementedError and allow bioformats to handle nd2
svs can end up with a tiff mimetype
Fix issuing annotation PATCH updates with empty labels
When uploading an annotation that fails to decode or validate, don't
keep the file.  On a validation failure, try to print the most likely
cause of the failure rather than entire schema.
Clearer error messages on bad annotations and don't keep the bad file
manthey and others added 28 commits December 2, 2025 08:41
In Jupyter, set edge value of tilesource to transparent
This doesn't yet support everything, since rasterio, umap-learn, and
rawpy aren't available yet.

Also, the zarr concurrency test fails.
Updated version number to 1.33.6 and added details for 1.33.5.
Lint dockerfiles using pre-commit and hadolint
Update python3.14 tests for latest rasterio
Bumps python from 3.13-slim to 3.14-slim.

---
updated-dependencies:
- dependency-name: python
  dependency-version: 3.14-slim
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Update the test dockerfile to address a CVE and make it smaller
When reading raw files via the PIL source, fix handling uint16 data
Refactored internal code to use contextlib.suppress where appropriate
When copying an item via girder, ensure permissions on annotations are
granted to the owner of the destination folder
@manthey manthey deleted the branch v3-experimental-integration January 12, 2026 16:13
@manthey manthey closed this Jan 12, 2026
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7 participants