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ViMMS 2.0.0

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@joewandy joewandy released this 12 Apr 13:48
V2.0.0
69bc8e2

This release of ViMMS contains many major changes, enhancements and features to accompany the paper 'Rapid Development of Improved Data-dependent Acquisition Strategies' (link to paper).
Here are some highlights of this release:

  • Added supports to allow controllers to run on both the simulated environment as well as on an actual mass spectrometry. At the moment, we only support Thermo Fusion instrument on IAPI.
  • Many new controllers, including the SmartROI and WeightedDEW controllers featured in the paper. These controllers outperform standard Top-N controllers in coverage, fragmenting more precursor ions that were missed before. For example usage, see these notebooks.
  • Sequence managers and multi-sample methods. For example, see these notebooks.
  • Many unit tests have been written to ensure robust codes. They can also be used to demonstrate how to run things in the simulated environment. See here.

Note: You can download ViMMS 1.0 used in our original paper from here. It contains codes up to the first paper, but they are quite out-of-date now.

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