Switch from jzarr to zarr-java when reading v2/0.4 data

.github/workflows/build.yml

@@ -11,7 +11,7 @@ jobs:
   build:
     strategy:
       matrix:
-        java: [8, 11, 17, 21]
+        java: [17, 21, 25]
         os: [ubuntu-latest]
     runs-on: ${{ matrix.os }}
     env:
@@ -38,7 +38,7 @@ jobs:
           path: build/distributions/*.zip
           retention-days: 30
       - name: Publish artifacts
-        if: github.event_name != 'pull_request' && matrix.java == 11 && github.repository_owner == 'glencoesoftware'
+        if: github.event_name != 'pull_request' && matrix.java == 17 && github.repository_owner == 'glencoesoftware'
         run: |
           ./gradlew -PArtifactoryUserName=${ArtifactoryUserName} -PArtifactoryPassword=${ArtifactoryPassword} publish
   release:
@@ -50,7 +50,7 @@ jobs:
       - name: Download artifacts from build
         uses: actions/download-artifact@v4
         with:
-          name: raw2ometiff 8
+          name: raw2ometiff 17
       - name: List artifacts
         run: ls -R
       - name: Create a GitHub release

README.md

@@ -9,7 +9,7 @@ This is the second half of iSyntax/.mrxs => OME-TIFF conversion.
 Requirements
 ============
 
-Java 8 or later is required.
+As of 0.10.0, Java 11 or later is required.
 
 libblosc (https://github.com/Blosc/c-blosc) version 1.9.0 or later must be installed separately.
 The native libraries are not packaged with any relevant jars.  See also note in jzarr readme (https://github.com/bcdev/jzarr/blob/master/README.md)
@@ -27,6 +27,8 @@ Installation
 Development Installation
 ========================
 
+As of 0.10.0, Java 17 is required to build raw2ometiff.
+
 1. Clone the repository:
 
     git clone git@github.com:glencoesoftware/raw2ometiff.git

build.gradle

@@ -8,9 +8,14 @@ plugins {
 group = 'com.glencoesoftware'
 version = '0.10.0-SNAPSHOT'
 
-mainClassName = 'com.glencoesoftware.pyramid.PyramidFromDirectoryWriter'
-sourceCompatibility = 1.8
-targetCompatibility = 1.8
+application {
+  mainClass = 'com.glencoesoftware.pyramid.PyramidFromDirectoryWriter'
+}
+java {
+  toolchain {
+    languageVersion = JavaLanguageVersion.of(11)
+  }
+}
 
 repositories {
     mavenCentral()
@@ -30,12 +35,11 @@ repositories {
 
 dependencies {
     implementation 'net.java.dev.jna:jna:5.10.0'
-    implementation 'dev.zarr:jzarr:0.4.2'
-    implementation 'dev.zarr:zarr-java:0.0.10'
+    implementation 'dev.zarr:zarr-java:0.1.0'
     implementation 'info.picocli:picocli:4.7.5'
     implementation 'me.tongfei:progressbar:0.9.0'
     implementation 'ome:formats-bsd:8.5.0'
-    implementation 'com.glencoesoftware:bioformats2raw:0.12.0-rc1'
+    implementation 'com.glencoesoftware:bioformats2raw:0.12.0-rc2'
     implementation group: 'ch.qos.logback', name: 'logback-classic', version: '1.3.16'
     implementation group: 'ch.qos.logback', name: 'logback-core', version: '1.3.16'
 
@@ -62,7 +66,7 @@ jar {
             "Implementation-Title": "raw2ometiff converter",
             "Implementation-Version": archiveVersion,
             "Implementation-Vendor": "Glencoe Software Inc.",
-            "Main-Class": mainClassName
+            "Main-Class": application.mainClass
         )
     }
 }

gradle/wrapper/gradle-wrapper.properties

@@ -1,6 +1,7 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.7-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-9.3.1-bin.zip
 networkTimeout=10000
+validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists