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Differential gene set enrichment analysis

Status: Open.

#49 In goodarzilab/pypage;

· abearab opened on Mar 14, 2024

Option to assign single enrichment score instead of scores per bins

Status: Open.

#48 In goodarzilab/pypage;

· abearab opened on Nov 30, 2023

Error in .filter_pathways method

Status: Open.

#47 In goodarzilab/pypage;

· abearab opened on Aug 30, 2023

A method to draw heatmap from given enrichment score matrix

Status: Open.

#46 In goodarzilab/pypage;

· abearab opened on Aug 30, 2023

Parallelization

Status: Open.

#40 In goodarzilab/pypage;

· artemy-bakulin opened on Jul 4, 2022

New discretization function

Status: Open.

#39 In goodarzilab/pypage;

· artemy-bakulin opened on Jul 3, 2022

Expose Heatmap kwargs to the user from PAGE.heatmap()

APIImprovements or additions to the APIImprovements or additions to the API

enhancementNew feature or requestNew feature or request

Status: Open.

#37 In goodarzilab/pypage;

· noamteyssier opened on Jun 28, 2022

Clean up the code in read annotation file in GeneOntology

APIImprovements or additions to the APIImprovements or additions to the API

documentationImprovements or additions to documentationImprovements or additions to documentation

TestingWrite up a testWrite up a test

Status: Open.

#36 In goodarzilab/pypage;

· noamteyssier opened on Jun 28, 2022

Exploring histogram binning for gene ontology data

questionFurther information is requestedFurther information is requested

Status: Open.

#35 In goodarzilab/pypage;

· noamteyssier opened on Jun 28, 2022

Generate Bins on ExpressionProfile after Finding Gene Intersection

AlgorithmicAlgorithmic ImprovementsAlgorithmic Improvements

bugSomething isn't workingSomething isn't working

Status: Open.

#34 In goodarzilab/pypage;

· noamteyssier opened on Jun 27, 2022

fix print bug in expression object

bugSomething isn't workingSomething isn't working

Status: Open.

#31 In goodarzilab/pypage;

· noamteyssier opened on Jun 1, 2022

Introduce gene -> pathway mapping as a networkx object

APIImprovements or additions to the APIImprovements or additions to the API

enhancementNew feature or requestNew feature or request

Status: Open.

#30 In goodarzilab/pypage;

· noamteyssier opened on May 16, 2022