spatial layout
#1138
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spatial layout
#1138
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…1127) chore: make the spatial examples the default
* feat: minimal join data transform * chore: add a todo statement * first working demo * more work on bigwig join * first demo to load bigwig and full chromosomes * all d3 models drawn * chore: remove console log statements and clean up code * chore: fix typo in the comment statement * chore: more clean up * chore: compact axis * fix: fix loading json-based track * feat: grammar extension for 3D layout (#1136) feat: better grammar extension for 3d vis
…e specs (#1139) chore: move the 3d examples to the top; use the new grammar in examples
…options (#1140) * feat: add a Yeast model example * add thumbnail for yeast example * make the yeast example the default at least for now --------- Co-authored-by: David Kouril <[email protected]>
* chore: minimal example replaced the default (draft) thumbnail, also removed the very early example i used (with linked views) and the thumbnail * chore: remove the multiple tracks example for now still needs some implementation to be able to show that
* feat: remove data requirement for 3D tracks * comment statement * chore: update demo examples
…not specified (#1143) * fix: parse genomic coordinates properly even if assembly is incorrectly defined * remove console logs * join correctly when there is only a single genomic field
* feat: add example of different coloring strategies constant vs nominal vs quantitative * chore: remove data fields in tracks since it's not needed anymore * chore: change the default model for minimal to stevens also reverted back to being really 'minimal'
… view (#1147) * wip: combining multiple tracks within a single spatial view very very bad so far, just a first checkpoint toward something sorta working * feat: add a new example for superimposition * wip: multiple overlaid track * feat: (wip)example for composing multiple tracks within one spatial view touches the join implementation a bit * chore: remove computation of parent views * chore: clean up of unused properties * chore: clean up (log, unused var) * chore: delete commented line * chore: delete log and commented out line
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Fix #
Toward #
basic use
{ "views": [ { "layout": { "type": "spatial", "model": { "type": "csv", "url": "https://.../yeast_model.csv", "xyz": ["x", "y", "z"], "chromosome": "chr", "position": "coord" } }, "tracks": [ { ... } ] } ] }Change List
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