The java code was used to integrate time-course RNAseq and NanoString expression data and epigenetic data to model the GRN for neural induction.
For citation, please refer to the paper below.
"A gene regulatory network for neural induction." Trevers KE, LU HC et al. Elife. 2023 Mar 3;12:e73189. doi:10.7554/elife.73189.