Develop

.github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "monthly"

.github/workflows/CompatHelper.yml

@@ -0,0 +1,16 @@
+name: CompatHelper
+on:
+  schedule:
+    - cron: '00 00 * * *'
+  workflow_dispatch:
+jobs:
+  CompatHelper:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }} #Reuse DOCUMENTER_KEY for CompatHelper 
+        run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/ci.yml

@@ -11,35 +11,24 @@ jobs:
       fail-fast: false
       matrix:
         version:
-          - '1.9'
+          - '1.10'
         os:
           - ubuntu-latest
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      - uses: actions/cache@v1
-        env:
-          cache-name: cache-artifacts
-        with:
-          path: ~/.julia/artifacts
-          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-test-${{ env.cache-name }}-
-            ${{ runner.os }}-test-
-            ${{ runner.os }}-
+      - uses: julia-actions/cache@v2
       - uses: julia-actions/julia-buildpkg@v1
 #      - uses: julia-actions/julia-runtest@v1
       - run: julia --project=. --color=yes --check-bounds=yes test/seq/runtests.jl
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v1
+      - uses: codecov/codecov-action@v5
         with:
-          file: ./lcov.info
           flags: unittests
-          name: codecov-umbrella
-          fail_ci_if_error: false
+          verbose: true
           token: ${{ secrets.CODECOV_TOKEN }}

.github/workflows/ci_mpi.yml

@@ -5,33 +5,18 @@ jobs:
     name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
     runs-on: ${{ matrix.os }}
     env:
-      P4EST_ROOT_DIR: "/opt/p4est/2.2/"
-      JULIA_PETSC_LIBRARY: "/opt/petsc/3.18/lib/libpetsc"
+      P4EST_ROOT_DIR: "/opt/p4est/2.8.5/"
+      JULIA_PETSC_LIBRARY: "/opt/petsc/3.23.0/lib/libpetsc"
     strategy:
       fail-fast: false
       matrix:
         version:
-          - '1.9'
+          - '1.10'
         os:
           - ubuntu-latest
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - name: Cache p4est
-        id: cache-p4est
-        uses: actions/cache@v2
-        with:
-         path: ${{env.P4EST_ROOT_DIR}}
-         key: ${{ runner.os }}-build-${{ env.P4EST_ROOT_DIR }}-
-         restore-keys: |
-           ${{ runner.os }}-build-${{ env.P4EST_ROOT_DIR }}-
-           ${{ runner.os }}-build-
-           ${{ runner.os }}-
-      - uses: julia-actions/setup-julia@v1
-        with:
-          version: ${{ matrix.version }}
-          arch: ${{ matrix.arch }}
       - name: Install p4est/petsc dependencies
         run: |
           sudo apt-get update 
@@ -41,7 +26,7 @@ jobs:
           # Install p4est 2.2 from sources
           CURR_DIR=$(pwd)
           PACKAGE=p4est
-          VERSION=2.2
+          VERSION=2.8.5
           INSTALL_ROOT=/opt
           P4EST_INSTALL=$INSTALL_ROOT/$PACKAGE/$VERSION
           TAR_FILE=$PACKAGE-$VERSION.tar.gz
@@ -62,11 +47,11 @@ jobs:
         run: |
           CURR_DIR=$(pwd)
           PACKAGE=petsc
-          VERSION=3.18
+          VERSION=3.23.0
           INSTALL_ROOT=/opt
           PETSC_INSTALL=$INSTALL_ROOT/$PACKAGE/$VERSION
           TAR_FILE=$PACKAGE-$VERSION.tar.gz
-          URL="https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/"
+          URL="https://web.cels.anl.gov/projects/petsc/download/release-snapshots/"
           ROOT_DIR=/tmp
           SOURCES_DIR=$ROOT_DIR/$PACKAGE-$VERSION
           BUILD_DIR=$SOURCES_DIR/build
@@ -76,17 +61,30 @@ jobs:
           cd $SOURCES_DIR
           ./configure --prefix=$PETSC_INSTALL --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 \
              --download-mumps --download-scalapack --download-parmetis --download-metis \
-             --download-ptscotch --with-debugging --with-x=0 --with-shared=1 \
+             --download-fblaslapack --download-ptscotch --with-debugging --with-x=0 --with-shared=1 \
              --with-mpi=1 --with-64-bit-indices
           make
           make install
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v2
+
+      - name: add MPIPreferences and external packages
+        shell: julia --color=yes --project=. {0}
+        run: |
+          using Pkg
+          Pkg.add("MPIPreferences")
+      - name: use MPI system binary 
+        shell: julia --color=yes --project=. {0}
+        run: |
+          using MPIPreferences
+          MPIPreferences.use_system_binary()
       - uses: julia-actions/julia-buildpkg@latest
-      - run: echo $PWD
-      - run: julia --project=. -e 'using Pkg; Pkg.instantiate();'
-      - run: julia --project=. -e 'using Pkg; Pkg.add("MPIPreferences")'
-      - run: julia --project=. -e 'using MPIPreferences; MPIPreferences.use_system_binary()'
-      - run: julia --project=. -e 'using Pkg; Pkg.build(); Pkg.precompile()'
       - run: julia --project=. --color=yes --check-bounds=yes test/mpi/runtests.jl
-      - uses: codecov/codecov-action@v1
+      - uses: codecov/codecov-action@v5
         with:
-          file: lcov.info
+          verbose: true
+          token: ${{ secrets.CODECOV_TOKEN }}