1.0.0

This release now includes support for single-cell and long-read data for the commands junctions extract and cis-splice-effects identify. We also have updated some of our statistical scripts to improve usability and allow for different ways of grouping nearby potential splice-associated variants.

0.5.2

Introduces new regtools cis-splice-effects associate command and updated docker image.

0.5.1

Stable release for DOI generation

0.5.0

Allows users to specify strandness of RNA alignments, enabling interpretation without XS tags - default is RF.

0.4.2

Feature skip counting fixed - note that this version relies on XS tags in your bam to extract strand info which requires STAR RNAseq alignments to be run with the--outSAMstrandfield option (see section 4.2.3 of the STAR manual)