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Allow separate B1 map for MTsat B1 correction #91
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…than at a higher level.
it looks like on this line (in the conditional) you are setting hMRI-toolbox/hmri_create_MTProt.m Line 858 in 9ccbe0f
but then I would expect only hMRI-toolbox/hmri_create_MTProt.m Line 878 in 9ccbe0f
hMRI-toolbox/hmri_create_MTProt.m Line 1078 in 9ccbe0f
That would be great if you can look at those lines again and confirm those are not some sort of artifact from merging the master into this one or a bug. Thanks in advance. |
Good catch; yes these look like lines from the error maps branch which weren't in the ancestor and so weren't updated... I'll fix them. |
Ah, wait. Only the |
I just corrected another bug: this was the bug:
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The B1 inhomogeneities of the excitation pulses and the MT pulse can be different, especially if pTx is used, meaning that they will need different B1 maps for correction. This pull request changes the user interface to allow two B1 maps to be provided, one to correct the excitation pulses (for R1 and PD calculation) and one to correct the MT pulses (for the MTsat calculation).
Some considerations:
Not clear if compatible with UNICORTWill break any old batch files, as it adds an extra selection layer for the B1 map dataNot clear if compatible with Helms MTsat correction modelEdit: Followed Baris' suggestion to not break old batch files, and I think UNICORT should work fine as long as a different B1 map is provided for the MT pulse.
Edit2: Followed Gunther's suggestion on how to undo implicit B1 correction when using the Helms model and a separate MT pulse B1 map.